Publications


Title		Year
Co-transcriptomic networks to identify conserved and lineage specific mechanisms for core eudicot defenses against a generalist pathogen R Singh, DJ Kliebenstein NCBI		2026
Host–Botrytis co-transcriptomics reveals finely tuned interactions with closely related legumes AJ Muhich, R Singh, C Tom, C Caseys, K Srinivas, L Faieta, B Grabbe, ... G3: Genes, Genomes, Genetics 16 (7), jkag125		2026
ATML1-GIR1-TPL/TPR transcriptional repression module controls glucosinolates and giant cells in Arabidopsis thaliana sepals. LE Apprill, B Ahmad, A Ulutas, A Agosto Ramos, S Na, SR Laytimi, ... Biorxiv: the Preprint Server for Biology		2026
A co-proteomic view of metabolite-specific interactions in the Botrytis cinerea-Arabidopsis pathosystem AJ Muhich, C Caseys, B Grabbe, C Montes-Serey, J Walley, ... bioRxiv, 2026.06. 05.730517		2026
Combined generalist and host-specific transcriptional strategies enable host generalism in the fungal pathogen Botrytis cinerea R Singh, AJ Muhich, C Tom, J McMillan, K Srinivas, L Faieta, C Caseys, ... Proceedings of the National Academy of Sciences 123 (21), e2521414123		2026
A multiplant transcriptomic atlas reveals conserved and lineage-specific defense architectures in response to Botrytis cinerea R Singh, AJ Muhich, C Tom, C Caseys, DJ Kliebenstein Proceedings of the National Academy of Sciences 123 (19), e2601719123		2026
Natural Variations of Spring Wheat Nitrogen and Carbon Assimilation under Different Inorganic Nitrogen Forms and CO2 levels P Kasemsap, J Zhang, DJ Kliebenstein, AJ Bloom bioRxiv, 2026.04. 28.721410		2026
Strategy Sets the Scene: Genetic architecture of linalool resistance in Botrytis cinerea M Madrigal, JC Moseley, DJ Kliebenstein, JA Dowell bioRxiv, 2026.04. 05.716576		2026
Fighting citrus Huanglongbing with evolutionary principles Q Li, H Yang, P Zhao, DJ Kliebenstein, J Ye Trends in Plant Science		2025
Evaluating Regulatory Module Function within Mitochondrial Pyruvate Dehydrogenase Complex C Keller, C Caseys, DJ Kliebenstein bioRxiv, 2025.11. 24.690278		2025
Convergence and constraint in glucosinolate evolution across the Brassicaceae AA Ramos, KA Bird, A Jain, GP Sumo, O Okegbe, L Holland, ... The Plant Cell 37 (11), koaf254		2025
Guns in rosettes: The Arabidopsis chemical weapons arsenal M Somssich, DJ Kliebenstein, TG Andersen Plant physiology 199 (2), kiaf411		2025
Characterization of transcriptional and metabolic responses to a complex plant growth‐promoting soil inoculum MT Brock, K Nozue, DJ Kliebenstein, BE Ewers, DS Mackay, L Maignien, ... Plant Biology 27 (6), 990-1005		2025
Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome KA Bird, JL Rifkin, CM McLaughlin, AM Harder, P Basnet, E Katz, T Brůna, ... bioRxiv, 2025.09. 26.678720		2025
Evaluating the Effectiveness of Data Reduction Techniques in QTL Mapping C Keller, C Caseys, DJ Kliebenstein bioRxiv, 2025.08. 29.673132		2025
Partial disruption of the Arabidopsis 2S seed storage proteins highlights the essential role of redox homeostasis in seed proteome plasticity and rebalancing C Bagaza, H Ansaf, A Yobi, K Czymmek, TP Mawhinney, AA Ramos, ... Plant Science, 112714		2025
Trans-regulatory loci shape natural variation of gene expression plasticity in Arabidopsis M Lensink, G Monroe, DJ Kliebenstein Genetics 230 (4), iyaf116		2025
An effluent pump family distributed across plant commensal bacteria conditions host-and organ-specific glucosinolate detoxification D Russ, CR Fitzpatrick, C Saha, TF Law, CD Jones, DJ Kliebenstein, ... Nature Communications 16 (1), 5699		2025
Polygenic strategies for host-specific and general virulence of Botrytis cinerea across diverse eudicot hosts C Caseys, DJ Kliebenstein Genetics 230 (3), iyaf079		2025
Molecular evolution of a reproductive barrier in maize and related species E Cryan, G Phinney, AS Seetharam, MMS Evans, EA Kellogg, J Zhan, ... Genetics 230 (3), iyaf085		2025
Breeding indoor watercress for enhanced crop biofortification: harnessing natural variation of wild germplasm Y Qian, E Katz, DJ Kliebenstein, G Taylor Frontiers in Plant Science 16, 1602171		2025
Phylogenetic and genomic mechanisms shaping glucosinolate innovation KA Bird, AA Ramos, DJ Kliebenstein Current Opinion in Plant Biology 85, 102705		2025
Targeted MYC2 stabilization confers citrus Huanglongbing resistance P Zhao, H Yang, Y Sun, J Zhang, K Gao, J Wu, C Zhu, C Yin, X Chen, ... Science 388 (6743), 191-198		2025
Effects of timed LED regimes on tomato plant traits, performance of two‐spotted spider mites, and predatory mites (Phytoseiulus persimilis) P Savi, S Hall, M Hernandez, A Mantri, D Kliebenstein, C Nansen Pest Management Science 81 (4), 2300-2311		2025
PGR: Evolution in Specialized Metabolite Novelty Across a Model Plant Order DJ Kliebenstein NSF Award Number 2434545. Directorate for Biological Sciences 24 (2434545 …		2025
Novel Regulators and Their Epistatic Networks in Arabidopsis' Defence Responses to Alternaria alternata Infection Q Zeng, X Liu, X Yan, J Zhang, C Li, C Yan, Y Zhang, D Kliebenstein, B Li Molecular Plant Pathology 26 (2), e70058		2025
Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa KA Bird, JR Brock, PP Grabowski, AM Harder, AL Healy, S Shu, K Barry, ... Genetics 229 (1), 1-44		2025
Structural variation reshapes population gene expression and trait variation in 2,105 Brassica napus accessions Y Zhang, Z Yang, Y He, D Liu, Y Liu, C Liang, M Xie, Y Jia, Q Ke, Y Zhou, ... Nature Genetics 56 (11), 2538-2550		2024
Leaf abaxial and adaxial surfaces differentially affect the interaction of Botrytis cinerea across several eudicots C Caseys, AJ Muhich, J Vega, M Ahmed, A Hopper, D Kelly, S Kim, ... The Plant Journal 120 (4), 1377-1391		2024
An efflux pump family distributed across plant commensal bacteria conditions host-and organ-specific detoxification of a host-specific glucosinolate D Russ, CR Fitzpatrick, C Saha, TF Law, CD Jones, DJ Kliebenstein, ... bioRxiv, 2024.10. 18.619176		2024
Microbial terroir: associations between soil microbiomes and the flavor chemistry of mustard (Brassica juncea) C Walsh, C Vanderburgh, L Grant, E Katz, DJ Kliebenstein, N Fierer New Phytologist 243 (5), 1951-1965		2024
The polygenic strategies ofBotrytis cinereafor virulence across eight eudicot host species C Caseys, DJ Kliebenstein		2024
The polygenic strategies of Botrytis cinerea for virulence across eight eudicot host species C Caseys, DJ Kliebenstein bioRxiv, 2024.08. 19.608699		2024
Convergently evolved metabolites are new to me but not to my attackers A Agosto‐Ramos, AJ Muhich, DJ Kliebenstein New Phytologist 242 (6)		2024
Complementing model species with model clades ME Mabry, RS Abrahams, IA Al-Shehbaz, WJ Baker, S Barak, MS Barker, ... The Plant Cell 36 (5), 1205-1226		2024
Leaf abaxial and adaxial surfaces differentially affect plant-fungal pathogen interactions C Caseys, AJ Muhich, J Vega, M Ahmed, A Hopper, D Kelly, S Kim, ... bioRxiv, 2024.02. 13.579726		2024
Specificity and breadth of plant specialized metabolite–microbe interactions DJ Kliebenstein Current Opinion in Plant Biology 77, 102459		2024
Genetic and molecular landscapes of the generalist phytopathogen Botrytis cinerea R Singh, C Caseys, DJ Kliebenstein Molecular plant pathology 25 (1), e13404		2024
Large-scale identification of novel transcriptional regulators of the aliphatic glucosinolate pathway in Arabidopsis L Chen, Q Zeng, J Zhang, C Li, X Bai, F Sun, DJ Kliebenstein, B Li Journal of Experimental Botany 75 (1), 300-315		2024
Altered defense patterns upon retrotransposition highlights the potential for rapid adaptation by transposable elements EST Aller, C Kanstrup, P Hunziker, DJ Kliebenstein, M Burow bioRxiv, 2023.12. 20.572632		2023
Making watercress (Nasturtium officinale) cropping sustainable: genomic insights into enhanced phosphorus use efficiency in an aquatic crop LE Hibbert, Y Qian, HK Smith, S Milner, E Katz, DJ Kliebenstein, G Taylor Frontiers in Plant Science 14, 1279823		2023
Epigenomic divergence correlates with sequence polymorphism in Arabidopsis paralogs SK Kenchanmane Raju, M Lensink, DJ Kliebenstein, C Niederhuth, ... New Phytologist 240 (3), 1292-1304		2023
Is specialized metabolite regulation specialized? DJ Kliebenstein Journal of Experimental Botany 74 (17), 4942-4948		2023
Watercress yield and quality vary depending on both genotype and environment: Results from highly contrasting growing systems of California and UK Y Qian, LE Hibbert, E Katz, HK Smith, DJ Kliebenstein, G Taylor Scientia Horticulturae 319, 112154		2023
Author Correction: Mutation bias reflects natural selection in Arabidopsis thaliana JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker, M Lensink, ... Nature 620 (7973), E13-E13		2023
Reply to: re-evaluating evidence for adaptive mutation rate variation JG Monroe, KD Murray, W Xian, T Srikant, P Carbonell-Bejerano, ... Nature 619 (7971), E57-E60		2023
Mutation bias reflects natural selection in Arabidopsis thaliana (vol 602, pg 101, 2022) J Monroe, T Srikant, P Carbonell-Bejerano, C Becker, M Lensink, ... NATURE		2023
Polygenic pathogen networks influence transcriptional plasticity in the Arabidopsis–Botrytis pathosystem P Krishnan, C Caseys, N Soltis, W Zhang, M Burow, DJ Kliebenstein Genetics 224 (3), iyad099		2023
Causes of mutation rate variability in plant genomes D Quiroz, M Lensink, DJ Kliebenstein, JG Monroe Annual Review of Plant Biology 74 (1), 751-775		2023
Better living through phytochemistry:“Phytoavengins” and reappraising the production-focused dichotomy for defensive phytochemicals DJ Kliebenstein, BH Kvitko Physiological and Molecular Plant Pathology 125, 101978		2023
Polygenic pathogen networks control of host and pathogen transcriptional plasticity in the Arabidopsis-Botrytis pathosystem P Krishnan, C Caseys, N Soltis, W Zhang, M Burow, DJ Kliebenstein bioRxiv, 2023.03. 16.533032		2023
Epigenomic divergence underlies sequence polymorphism and the evolutionary fate of duplicate paralogs inA. thaliana KR SK, M Lensink, DJ Kliebenstein, C Niederhuth, G Monroe		2023
Epigenomic divergence underlies sequence polymorphism and the evolutionary fate of duplicate paralogs in A. thaliana SK Kenchanmane Raju, M Lensink, DJ Kliebenstein, C Niederhuth, ... bioRxiv, 2023.03. 02.530917		2023
The rhizosphere microbiome and host plant glucosinolates exhibit feedback cycles in Brassica rapa E DeWolf, MT Brock, WJ Calder, DJ Kliebenstein, E Katz, B Li, ... Molecular Ecology 32 (3), 741-751		2023
Genetic variation underlying differential ammonium and nitrate responses in Arabidopsis thaliana E Katz, A Knapp, M Lensink, CK Keller, J Stefani, JJ Li, E Shane, ... The Plant Cell 34 (12), 4696-4713		2022
Integrated omics reveal novel functions and underlying mechanisms of the receptor kinase FERONIA in Arabidopsis thaliana P Wang, NM Clark, TM Nolan, G Song, PM Bartz, CY Liao, ... The Plant Cell 34 (7), 2594-2614		2022
Improved yield and health benefits of watercress grown in an indoor vertical farm Y Qian, LE Hibbert, S Milner, E Katz, DJ Kliebenstein, G Taylor Scientia horticulturae 300, 111068		2022
The ease and complexity of identifying and using specialized metabolites for crop AJ Muhich, A Agosto-Ramos, DJ Kliebenstein Emerging Topics in Life Sciences, 6 (2)		2022
A keystone gene underlies the persistence of an experimental food web MA Barbour, DJ Kliebenstein, J Bascompte Science 376 (6588), 70-73		2022
The ease and complexity of identifying and using specialized metabolites for crop engineering AJ Muhich, A Agosto-Ramos, DJ Kliebenstein Emerging Topics in Life Sciences 6 (2), 153-162		2022
Plant Responses Underlying Timely Specialized Metabolites Induction of Brassica Crops M Doghri, VM Rodríguez, DJ Kliebenstein, M Francisco Frontiers in Plant Science 12, 807710		2022
Mutation bias reflects natural selection in Arabidopsis thaliana JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker, M Lensink, ... Nature 602 (7895), 101-105		2022
Aphid species and feeding location on canola influences the impact of glucosinolates on a native lady beetle predator X Cibils-Stewart, DJ Kliebenstein, B Li, K Giles, BP McCornack, J Nechols Environmental Entomology 51 (1), 52-62		2022
A genome‐scale TF–DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism M Tang, B Li, X Zhou, T Bolt, JJ Li, N Cruz, A Gaudinier, R Ngo, ... Molecular Systems Biology 17 (11), MSB202110625		2021
A reevaluation of the role of the ASIL trihelix transcription factors as repressors of the seed maturation program KA Ruiz, JM Pelletier, Y Wang, MJ Feng, JS Behr, TQ Ðào, B Li, ... Plant Direct 5 (10), e345		2021
Quantitative interactions: the disease outcome of Botrytis cinerea across the plant kingdom C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, DJ Kliebenstein G3 11 (8), jkab175		2021
Appendix A: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe E Katz, SR Abrahams, C Bagaza, S Holden, CJ Pires, R Angelovici, ... THE POWER OF SYNTENY: DEEP EVOLUTIONARY INSIGHTS FROM COMPARATIVE GENOMICS, 91		2021
Innovation, conservation, and repurposing of gene function in root cell type development K Kajala, M Gouran, L Shaar-Moshe, GA Mason, J Rodriguez-Medina, ... Cell 184 (12), 3333-3348. e19		2021
Genome size evolution is associated with climate seasonality and glucosinolates, but not life history, soil nutrients or range size, across a clade of mustards NI Cacho, PJ McIntyre, DJ Kliebenstein, SY Strauss Annals of Botany 127 (7), 887-902		2021
Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe E Katz, JJ Li, B Jaegle, H Ashkenazy, SR Abrahams, C Bagaza, S Holden, ... Elife 10, e67784		2021
Fine mapping identifies NAD‐ME1 as a candidate underlying a major locus controlling temporal variation in primary and specialized metabolism in Arabidopsis M Francisco, DJ Kliebenstein, VM Rodríguez, P Soengas, R Abilleira, ... The Plant Journal 106 (2), 454-467		2021
The Arabidopsis thaliana nucleotide sugar transporter GONST2 is a functional homolog of GONST1 B Jing, T Ishikawa, N Soltis, N Inada, Y Liang, G Murawska, L Fang, ... Plant Direct 5 (3), e00309		2021
Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly P Zhao, X Zhang, Y Gong, D Wang, D Xu, N Wang, Y Sun, L Gao, SS Liu, ... PLoS Pathogens 17 (1), e1008770		2021
Modeling quantitative interactions: the disease outcome of generalist fungal pathogen across the plant kingdom C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, D Kliebenstein Authorea 2020 (1114)		2020
flasher, a novel mutation in a glucosinolate modifying enzyme, conditions changes in plant architecture and hormone homeostasis AN Garrido, E Supijono, P Boshara, SJ Douglas, PE Stronghill, B Li, ... The Plant Journal 103 (6), 1989-2006		2020
Plant secondary metabolites as defenses, regulators, and primary metabolites: the blurred functional trichotomy M Erb, DJ Kliebenstein Plant physiology 184 (1), 39-52		2020
Research PGR: Co-transcriptome networks to identify conserved and lineage specific plant resistance against a generalist pathogen DJ Kliebenstein NSF Award Number 2020754. Directorate for Biological Sciences 20 (2020754 …		2020
FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes P Fernández-Calvo, S Iñigo, G Glauser, R Vanden Bossche, M Tang, B Li, ... The New Phytologist 227 (4), 1124-1137		2020
Diverse allyl glucosinolate catabolites independently influence root growth and development E Katz, R Bagchi, V Jeschke, ARM Rasmussen, A Hopper, M Burow, ... Plant Physiology 183 (3), 1376-1390		2020
Genetic diversity increases food-web persistence in the face of climate warming MA Barbour, DJ Kliebenstein, J Bascompte bioRxiv, 2020.06. 23.167387		2020
mGWAS uncovers Gln-Glucosinolate seed-specific interaction and its role in metabolic homeostasis ML Slaten, A Yobi, C Bagaza, YO Chan, V Shrestha, S Holden, E Katz, ... Plant physiology 183 (2), 483-500		2020
Pathogen Genetic Control of Transcriptome Variation in the Arabidopsis thaliana – Botrytis cinerea Pathosystem NE Soltis, C Caseys, W Zhang, JA Corwin, S Atwell, DJ Kliebenstein Genetics 215 (1), 253-266		2020
Using networks to identify and interpret natural variation DJ Kliebenstein Current opinion in plant biology 54, 122-126		2020
Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense B Li, M Tang, C Caseys, A Nelson, M Zhou, X Zhou, SM Brady, ... Genetics 214 (2), 529-541		2020
mGWAS Uncovers Gln-Glucosinolate Seed-Speciic Interaction and its Role in Metabolic Homeostasis E Katz, C Kanstrup, AE Lipka, DJ Kliebenstein, HH Nour-Eldin, ...		2020
Identification and stacking of crucial traits required for the domestication of pennycress R Chopra, EB Johnson, R Emenecker, EB Cahoon, J Lyons, ... Nature Food 1 (1), 84-91		2020
PMR 5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens D Chiniquy, W Underwood, J Corwin, A Ryan, H Szemenyei, CC Lim, ... The Plant Journal 100 (5), 1022-1035		2019
Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels M Salehin, B Li, M Tang, E Katz, L Song, JR Ecker, DJ Kliebenstein, ... Nature communications 10 (1), 4021		2019
Plant networks as traits and hypotheses: moving beyond description A Marshall-Colón, DJ Kliebenstein Trends in Plant Science 24 (9), 840-852		2019
Viruses mobilize plant immunity to deter nonvector insect herbivores P Zhao, X Yao, C Cai, R Li, J Du, Y Sun, M Wang, Z Zou, Q Wang, ... Science Advances 5 (8), eaav9801		2019
Empirical testing of how changing regulatory module membership affects module function within central metabolism DJ Kliebenstein NSF Award Number 1906486. Directorate for Biological Sciences 19 (1906486), 6486		2019
Questionomics: using big data to ask and answer big questions DJ Kliebenstein The Plant Cell 31 (7), 1404-1405		2019
Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield W Zhang, JA Corwin, DH Copeland, J Feusier, R Eshbaugh, DE Cook, ... elife 8, e44279		2019
Progress toward the identification and stacking of crucial domestication traits in pennycress R Chopra, EB Johnson, R Emenecker, EB Cahoon, J Lyons, ... bioRxiv, 609990		2019
The effect of rhizosphere microbes outweighs host plant genetics in reducing insect herbivory CJ Hubbard, B Li, R McMinn, MT Brock, L Maignien, BE Ewers, ... Molecular ecology 28 (7), 1801-1811		2019
Interactions of Tomato and Botrytis cinerea Genetic Diversity: Parsing the Contributions of Host Differentiation, Domestication, and Pathogen Variation NE Soltis, S Atwell, G Shi, R Fordyce, R Gwinner, D Gao, A Shafi, ... The Plant Cell 31 (2), 502-519		2019
Viruses mobilize plant immunity to deter nonvector insect herbivores. ZPZ Zhao PingZhi, YXM Yao XiangMei, CCX Cai CongXi, LR Li Ran, ...		2019
Quantitative interactions drive Botrytis cinerea disease outcome across the plant kingdom C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, D Kliebenstein BioRxiv, 507491		2018
Resequencing and association mapping of the generalist pathogen Botrytis cinerea S Atwell, JA Corwin, N Soltis, W Zhang, D Copeland, J Feusier, ... BioRxiv, 489799		2018
Regulation of root angle and gravitropism TW Toal, M Ron, D Gibson, K Kajala, B Splitt, LS Johnson, ND Miller, ... G3: Genes, Genomes, Genetics 8 (12), 3841-3855		2018
Transcriptional regulation of nitrogen-associated metabolism and growth A Gaudinier, J Rodriguez-Medina, L Zhang, A Olson, C Liseron-Monfils, ... Nature 563 (7730), 259-264		2018
Digital imaging combined with genome-wide association mapping links loci to plant-pathogen interaction traits RF Fordyce, NE Soltis, C Caseys, R Gwinner, JA Corwin, S Atwell, ... Plant physiology 178 (3), 1406-1422		2018
Plant nutrient acquisition entices herbivore DJ Kliebenstein Science 361 (6403), 642-643		2018
Network-guided discovery of extensive epistasis between transcription factors involved in aliphatic glucosinolate biosynthesis. LBH Li BaoHua, M Tang, A Nelson, H Caligagan, ZX Zhou Xue, ...		2018
Fine mapping and candidate gene analysis for a major locus controlling circadian clock and secondary metabolism in Arabidopsis M Francisco Candeira, VM Rodríguez Graña, ME Cartea González, ...		2018
The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis R Samira, B Li, D Kliebenstein, C Li, E Davis, JW Gillikin, TA Long Plant Molecular Biology 97 (4), 297-309		2018
GONST2 transports GDP-Mannose for sphingolipid glycosylation in the Golgi apparatus of Arabidopsis T Ishikawa, D Loqué, Y Liang, JC Mortimer, N Inada, F Andeberhan, ... (No Title)		2018
GONST2 transports GDP-Mannose for sphingolipid glycosylation in the Golgi apparatus of Arabidopsis B Jing, T Ishikawa, N Soltis, N Inada, Y Liang, G Murawska, ... BioRxiv, 346775		2018
Brassica oleracea: the dog of the plant world ME Mabry, E Gallagher, MA Gore, JA Labate, SD Turner, IR Baxter, ... Meeting Abstract 1		2018
Comparison of the Relative Potential for Epigenetic and Genetic Variation To Contribute to EST Aller, LM Jagd, DJ Kliebenstein G3 (Bethesda, Md.), 8 (5)		2018
Comparison of the relative potential for epigenetic and genetic variation to contribute to trait stability EST Aller, LM Jagd, DJ Kliebenstein, M Burow G3: Genes, Genomes, Genetics 8 (5), 1733-1746		2018
Rhizosphere microbes and host plant genotype influence the plant metabolome and reduce insect herbivory CJ Hubbard, B Li, R McMinn, MT Brock, L Maignien, BE Ewers, ... bioRxiv, 297556		2018
Combining digital imaging and genome wide association mapping to dissect uncharacterized traits in plant/pathogen interactions RF Fordyce, NE Soltis, C Caseys, R Gwinner, JA Corwin, S Atwell, ... bioRxiv, 296939		2018
Crop domestication and pathogen virulence: Interactions of tomato and Botrytis genetic diversity NE Soltis, S Atwell, G Shi, R Fordyce, R Gwinner, D Gao, A Shafi, ... bioRxiv, 255992		2018
Plant-Necrotroph Co-transcriptome Networks Illuminate a Metabolic Battlefield S Atwell, W Zhang, JA Corwin, DE Cook, JE Feusier, DJ Kliebenstein, ...		2018
A generalist pathogen view of plant evolution C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, D Kliebenstein bioRxiv, 507491		2018
Network-guided discovery of extensive epistasis between transcription factors involved in aliphatic glucosinolate biosynthesis B Li, M Tang, A Nelson, H Caligagan, X Zhou, C Clark-Wiest, R Ngo, ... The Plant Cell 30 (1), 178-195		2018
An evolutionarily young defense metabolite influences the root growth of plants via the ancient TOR signaling pathway FG Malinovsky, MLF Thomsen, SJ Nintemann, LM Jagd, B Bourgine, ... Elife 6, e29353		2017
Initiation of ER body formation and indole glucosinolate metabolism by the plastidial retrograde signaling metabolite, MEcPP JZ Wang, B Li, Y Xiao, Y Ni, H Ke, P Yang, A de Souza, M Bjornson, X He, ... Molecular plant 10 (11), 1400-1416		2017
Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity: The Jasmonic Acid and Salicylic Acid Networks within the Arabidopsis/Botrytis Pathosystem W Zhang, JA Corwin, D Copeland, J Feusier, R Eshbaugh, F Chen, ... The Plant Cell 29 (11), 2727-2752		2017
Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field RE Kerwin, J Feusier, A Muok, C Lin, B Larson, D Copeland, JA Corwin, ... New Phytologist 215 (3), 1249-1263		2017
Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population RJC Markelz, MF Covington, MT Brock, UK Devisetty, DJ Kliebenstein, ... G3: Genes, Genomes, Genetics 7 (7), 2259-2270		2017
A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels SJ Douglas, B Li, DJ Kliebenstein, E Nambara, CD Riggs PLoS One 12 (5), e0177045		2017
A global coexpression network approach for connecting genes to specialized metabolic pathways in plants JH Wisecaver, AT Borowsky, V Tzin, G Jander, DJ Kliebenstein, A Rokas The Plant Cell 29 (5), 944-959		2017
An integrated RNAseq-¹H NMR metabolomics approach to understand soybean primary metabolism regulation in response to Rhizoctonia foliar blight disease TR Copley, KA Aliferis, DJ Kliebenstein, SH Jabaji BMC plant biology 17 (1), 84		2017
Quantitative resistance: more than just perception of a pathogen JA Corwin, DJ Kliebenstein The Plant Cell 29 (4), 655-665		2017
Initiation of ER body formation and indole glucosinolate metabolism by the plastidial retrograde signaling metabolite, MEcPP. WJZ Wang JinZheng, LBH Li BaoHua, XYM Xiao YanMei, NY Ni Yu, ...		2017
Epistasis 9 environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field DJ Kliebenstein New Phytologist, 1		2017
Observability of plant metabolic networks Is reflected in the correlation of metabolic profiles K Schwahn, A Küken, DJ Kliebenstein, AR Fernie, Z Nikoloski Plant Physiology 172 (2), 1324-1333		2016
An integrative genetic study of rice metabolism, growth and stochastic variation reveals potential C/N partitioning loci B Li, Y Zhang, SA Mohammadi, D Huai, Y Zhou, DJ Kliebenstein Scientific Reports 6 (1), 30143		2016
Genome wide association mapping in Arabidopsis thaliana identifies novel genes involved in linking allyl glucosinolate to altered biomass and defense M Francisco Candeira, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, ... Frontiers Media		2016
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense M Francisco, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, RE Kerwin, ... Frontiers in plant science 7, 1010		2016
False idolatry of the mythical growth versus immunity tradeoff in molecular systems plant pathology DJ Kliebenstein Physiological and Molecular Plant Pathology 95, 55-59		2016
The defense metabolite, allyl glucosinolate, modulates Arabidopsis thaliana biomass dependent upon the endogenous glucosinolate pathway M Francisco Candeira, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, ... Frontiers Media		2016
The Defense Metabolite, Allyl Glucosinolate, Modulates Arabidopsis thaliana Biomass Dependent upon the Endogenous Glucosinolate Pathway M Francisco, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, R Kerwin, ... Frontiers in Plant Science 7, 774		2016
Isolate dependency of Brassica rapa resistance QTLs to Botrytis cinerea. ZW Zhang Wei, KST Kwon SoonTae, CF Chen Fang, DJ Kliebenstein		2016
Expansive Phenotypic Landscape of Botrytis cinerea Shows Differential Contribution of Genetic Diversity and Plasticity JA Corwin, A Subedy, R Eshbaugh, DJ Kliebenstein Molecular Plant-Microbe Interactions 29 (4), 287-298		2016
Molecular mechanisms governing differential robustness of development and environmental responses in plants J Lachowiec, C Queitsch, DJ Kliebenstein Annals of botany 117 (5), 795-809		2016
Isolate Dependency of Brassica rapa Resistance QTLs to Botrytis cinerea W Zhang, ST Kwon, F Chen, DJ Kliebenstein Frontiers in Plant Science 7, 161		2016
The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics JA Corwin, D Copeland, J Feusier, A Subedy, R Eshbaugh, C Palmer, ... PLoS genetics 12 (2), e1005789		2016
Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana G Bethke, A Thao, G Xiong, B Li, NE Soltis, N Hatsugai, RA Hillmer, ... The Plant Cell 28 (2), 537-556		2016
An integrative genetic study of rice metabolism, growth and stochastic variation reveals potential C/N partitioning loci. LBH Li BaoHua, ZYY Zhang YuanYuan, SA Mohammadi, ...		2016
Nonlinear selection and a blend of convergent, divergent and parallel evolution shapes natural variation in glucosinolates DJ Kliebenstein, NI Cacho Advances in botanical research 80, 31-55		2016
Overexpression of three glucosinolate biosynthesis genes in Brassica napus identifies enhanced resistance to Sclerotinia sclerotiorum and Botrytis cinerea. ZYY Zhang YuanYuan, HDX Huai DongXin, YQY Yang QingYong, ...		2015
Evolution retraces its steps to advance DJ Kliebenstein Elife 4, e12386		2015
Natural variation of plant metabolism: genetic mechanisms, interpretive caveats, and evolutionary and mechanistic insights NE Soltis, DJ Kliebenstein Plant Physiology 169 (3), 1456-1468		2015
Macroevolutionary patterns of glucosinolate defense and tests of defense‐escalation and resource availability hypotheses NI Cacho, DJ Kliebenstein, SY Strauss New Phytologist 208 (3), 915-927		2015
Overexpression of three glucosinolate biosynthesis genes in Brassica napus identifies enhanced resistance to Sclerotinia sclerotiorum and Botrytis cinerea Y Zhang, D Huai, Q Yang, Y Cheng, M Ma, DJ Kliebenstein, Y Zhou PLoS One 10 (10), e0140491		2015
The Plant Cell Introduces Breakthrough Reports: A New Forum for Cutting-Edge Plant Research S Merchant, SY Bednarek, JA Birchler, G Coupland, NA Eckardt, ... The Plant Cell 27 (10), 2667-2668		2015
Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity S Atwell, JA Corwin, NE Soltis, A Subedy, KJ Denby, DJ Kliebenstein Frontiers in microbiology 6, 996		2015
Investigation of the multifunctional gene AOP3 expands the regulatory network fine-tuning glucosinolate production in Arabidopsis LM Jensen, DJ Kliebenstein, M Burow Frontiers in Plant Science 6, 762		2015
Natural variation in cross-talk between glucosinolates and onset of flowering in Arabidopsis LM Jensen, HSK Jepsen, BA Halkier, DJ Kliebenstein, M Burow Frontiers in plant science 6, 697		2015
Transcriptional networks governing plant metabolism A Gaudinier, M Tang, DJ Kliebenstein Current Plant Biology 3, 56-64		2015
The glucosinolate biosynthetic gene AOP2 mediates feed-back regulation of jasmonic acid signaling in Arabidopsis M Burow, S Atwell, M Francisco, RE Kerwin, BA Halkier, DJ Kliebenstein Molecular plant 8 (8), 1201-1212		2015
Quantitative Variation in Responses to Root Spatial Constraint within Arabidopsis thaliana B Joseph, L Lau, DJ Kliebenstein The Plant Cell 27 (8), 2227-2243		2015
Reassess the t Test: Interact with All Your Data via ANOVA SM Brady, M Burow, W Busch, Ö Carlborg, KJ Denby, J Glazebrook, ... The Plant Cell 27 (8), 2088-2094		2015
The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana. ZYY Zhang YuanYuan, LBH Li BaoHua, HDX Huai DongXin, ...		2015
Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses M Nafisi, M Stranne, L Fimognari, S Atwell, HJ Martens, PR Pedas, ... Frontiers in Plant Science 6, 550		2015
The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana Y Zhang, B Li, D Huai, Y Zhou, DJ Kliebenstein Frontiers in Plant Science 6, 343		2015
Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness R Kerwin, J Feusier, J Corwin, M Rubin, C Lin, A Muok, B Larson, B Li, ... Elife 4, e05604		2015
Keeping the rhythm: light/dark cycles during postharvest storage preserve the tissue integrity and nutritional content of leafy plants JD Liu, D Goodspeed, Z Sheng, B Li, Y Yang, DJ Kliebenstein, J Braam BMC Plant Biology 15 (1), 92		2015
In planta variation of volatile biosynthesis: an alternative biosynthetic route to the formation of the pathogen-induced volatile homoterpene DMNT via triterpene degradation in … R Sohrabi, JH Huh, S Badieyan, LH Rakotondraibe, DJ Kliebenstein, ... The Plant Cell 27 (3), 874-890		2015
An Arabidopsis gene regulatory network for secondary cell wall synthesis M Taylor-Teeples, L Lin, M De Lucas, G Turco, TW Toal, A Gaudinier, ... Nature 517 (7536), 571-575		2015
Genetic variation in the nuclear and organellar genomes modulates stochastic variation in the metabolome, growth, and defense B Joseph, JA Corwin, DJ Kliebenstein PLoS genetics 11 (1), e1004779		2015
Plant Physiology Preview. Published on August 13, 2015, as DOI: 10.1104/pp. 15.01108 NE Soltis, DJ Kliebenstein		2015
FOCUS ON METABOLISM IMSMI Desalegn, W Etalo, RCH De Vos, MHAJ Joosten, RD Hall, ...		2015
Promoter-based integration in plant defense regulation B Li, A Gaudinier, M Tang, M Taylor-Teeples, NT Nham, C Ghaffari, ... Plant physiology 166 (4), 1803-1820		2014
Meta-analysis of metabolome QTLs in Arabidopsis: trying to estimate the network size controlling genetic variation of the metabolome B Joseph, S Atwell, JA Corwin, B Li, DJ Kliebenstein Frontiers in plant science 5, 461		2014
Response of turnip to Botrytis cinerea infection and their relationship with glucosinolate profiles ST Kwon, DJ Kliebenstein Korean Journal of Plant Resources 27 (4), 371-379		2014
The AT-hook motif-encoding gene METABOLIC NETWORK MODULATOR 1 underlies natural variation in Arabidopsis primary metabolism B Li, DJ Kliebenstein Frontiers in Plant Science 5, 415		2014
Evolution and Domestication of Core Eudicot Defense Mechanisms against a Common Generalist Pathogen DJ Kliebenstein NSF Award Number 1339125. Directorate for Biological Sciences 13 (1339125 …		2014
Synthetic biology of metabolism: using natural variation to reverse engineer systems DJ Kliebenstein Current opinion in plant biology 19, 20-26		2014
Interview with Daniel Kliebenstein DJ Kliebenstein Trends in Plant Science 19 (4), 204-205		2014
Orchestration of plant defense systems: genes to populations DJ Kliebenstein Trends in Plant Science 19 (4), 250-255		2014
Quantitative genetics and genomics of plant resistance to insects DJ Kliebenstein Annual Plant Reviews: Insect‐Plant Interactions 47, 235-262		2014
Promoter-Based Integration in Plant Defense Regulation1 [W][OPEN] B Li, A Gaudinier, M Tang, M Taylor-Teeples, NT Nham, C Ghaffari, ...		2014
Natural genetic variation in growth and metabolite regulatory roles of Allyl glucosinolate in Arabidopsis thaliana M Francisco Candeira, DJ Kliebenstein Wageningen Universiteit		2014
Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome B Joseph, JA Corwin, B Li, S Atwell, DJ Kliebenstein Elife 2, e00776		2013
Modular Transcriptional Coordination of Central Metabolism DJ Kliebenstein NSF Award Number 1330337. Directorate for Biological Sciences 13 (1330337 …		2013
Fatty acids and early detection of pathogens JW Walley, DJ Kliebenstein, RM Bostock, K Dehesh Current opinion in plant biology 16 (4), 520-526		2013
Postharvest circadian entrainment enhances crop pest resistance and phytochemical cycling D Goodspeed, JD Liu, EW Chehab, Z Sheng, M Francisco, ... Current Biology 23 (13), 1235-1241		2013
Hierarchical Nuclear and Cytoplasmic Genetic Architectures for Plant Growth and Defense within Arabidopsis B Joseph, JA Corwin, T Züst, B Li, M Iravani, G Schaepman-Strub, ... The Plant Cell 25 (6), 1929-1945		2013
Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato M Ron, MW Dorrity, M de Lucas, T Toal, RI Hernandez, SA Little, ... Plant Physiology 162 (2), 755-768		2013
Conducting Genome‐Wide Association Mapping of Metabolites S Atwell, DJ Kliebenstein The Handbook of Plant Metabolomics, 255-271		2013
New synthesis—regulatory evolution, the veiled world of chemical diversification DJ Kliebenstein Journal of chemical ecology 39 (3), 349-349		2013
Making new molecules—evolution of structures for novel metabolites in plants DJ Kliebenstein Current opinion in plant biology 16 (1), 112-117		2013
Natural enemies drive geographic variation in plant defenses T Züst, C Heichinger, U Grossniklaus, R Harrington, DJ Kliebenstein, ... Science 338 (6103), 116-119		2012
Exploring the shallow end; estimating information content in transcriptomics studies DJ Kliebenstein Frontiers in plant science 3, 213		2012
Plant defense compounds: systems approaches to metabolic analysis DJ Kliebenstein Annual review of phytopathology 50 (1), 155-173		2012
Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ... The Plant Cell 24 (9), 3530-3557		2012
Making new molecules–evolution of pathways for novel metabolites in plants DJ Kliebenstein, A Osbourn Current opinion in plant biology 15 (4), 415-423		2012
Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes Y Xiao, T Savchenko, EEK Baidoo, WE Chehab, DM Hayden, V Tolstikov, ... Cell 149 (7), 1525-1535		2012
What can causal networks tell us about metabolic pathways? RH Blair, DJ Kliebenstein, GA Churchill PLoS computational biology 8 (4), e1002458		2012
Model misinterpretation within biology: phenotypes, statistics, networks, and inference DJ Kliebenstein Frontiers in plant science 3, 13		2012
Model misinterpretation DJ Kliebenstein Frontiers in Plant Science 3		2012
Making new molecules-evolution of structures for novel metabolites in plants DJ Kliebenstein Current Opinion in Plant Biology 16, 1-6		2012
An ecological genomic approach challenging the paradigm of differential plant responses to specialist versus generalist insect herbivores MG Bidart-Bouzat, D Kliebenstein Oecologia 167 (3), 677-689		2011
Genomic analysis of QTLs and genes altering natural variation in stochastic noise JM Jimenez-Gomez, JA Corwin, B Joseph, JN Maloof, DJ Kliebenstein PLoS genetics 7 (9), e1002295		2011
Biosynthesis and Defensive Function of N ^Δ-Acetylornithine, a Jasmonate-Induced Arabidopsis Metabolite AM Adio, CL Casteel, M De Vos, JH Kim, V Joshi, B Li, C Juéry, J Daron, ... The Plant Cell 23 (9), 3303-3318		2011
Cofactome analyses reveal enhanced flux of carbon into oil for potential biofuel production DM Hayden, H Rolletschek, L Borisjuk, J Corwin, DJ Kliebenstein, ... The Plant Journal 67 (6), 1018-1028		2011
The quantitative genetics of phenotypic error or uniformity DJ Kliebenstein Frontiers in Genetics 2, 59		2011
Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana EKF Chan, HC Rowe, JA Corwin, B Joseph, DJ Kliebenstein PLoS biology 9 (8), e1001125		2011
Chemically mediated tritrophic interactions: opposing effects of glucosinolates on a specialist herbivore and its predators R Chaplin‐Kramer, DJ Kliebenstein, A Chiem, E Morrill, NJ Mills, ... Journal of Applied Ecology 48 (4), 880-887		2011
Intronic T-DNA Insertion Renders Arabidopsis opr3 a Conditional Jasmonic Acid-Producing Mutant EW Chehab, S Kim, T Savchenko, D Kliebenstein, K Dehesh, J Braam Plant Physiology 156 (2), 770-778		2011
Arctic mustard flower color polymorphism controlled by petal-specific downregulation at the threshold of the anthocyanin biosynthetic pathway CA Dick, J Buenrostro, T Butler, ML Carlson, DJ Kliebenstein, JB Whittall PloS one 6 (4), e18230		2011
Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages in Arabidopsis RE Kerwin, JM Jimenez-Gomez, D Fulop, SL Harmer, JN Maloof, ... The Plant Cell 23 (2), 471-485		2011
Using knockout mutants to reveal the growth costs of defensive traits T Züst, B Joseph, KK Shimizu, DJ Kliebenstein, LA Turnbull Proceedings of the Royal Society B: Biological Sciences 278 (1718), 2598		2011
Genomic analysis of QTLs and genes altering natural variation in stochastic noise JJ Gómez, JA Corwin, B Joseph, JN Maloof, DJ Kliebenstein < bound method Organization. get_name_with_acronym of< Organization: INRAE …		2011
Genomic Analysis of QTLs and Genes Altering Natural Variation in Stochastic JM Jimenez-Gomez, JA Corwin, B Joseph, JN Maloof, DJ Kliebenstein		2011
Combining Genome-Wide Association Mapping and Transcriptional Networks to EKF Chan, HC Rowe, JA Corwin, B Joseph, DJ Kliebenstein		2011
Arctic Mustard Flower Color Polymorphism Controlled by Petal-Specific CA Dick, J Buenrostro, T Butler, ML Carlson, DJ Kliebenstein		2011
Quantitative genomics of natural variation in plant metabolism: the illusion of simplicity DJ Kliebenstein 第二届植物代谢国际会议论文集		2011
The complex genetic architecture of the metabolome EKF Chan, HC Rowe, BG Hansen, DJ Kliebenstein PLoS genetics 6 (11), e1001198		2010
Genetic and functional modularity: how does an organism solve a nearly infinite genetic/environmental problem space? DJ Kliebenstein Heredity 106 (6), 909		2010
Arabidopsis 2010: Simultaneous Genome Wide Association Mapping in Plant Host and Pathogen DJ Kliebenstein NSF Award Number 1021861. Directorate for Biological Sciences 10 (1021861 …		2010
A new method for measuring relative growth rate can uncover the costs of defensive compounds in Arabidopsis thaliana C Paul‐Victor, T Züst, M Rees, DJ Kliebenstein, LA Turnbull New Phytologist 187 (4), 1102-1111		2010
Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-wide Association Mapping EKF Chan, HC Rowe, DJ Kliebenstein Genetics 185 (3), 991-1007		2010
Using network biology to identify quantitative genetic variation altering signaling in both plant host and generalist pathogens DJ Kliebenstein PHYTOPATHOLOGY 100 (6), S165-S165		2010
Regulatory networks of glucosinolates shape Arabidopsis thaliana fitness M Burow, BA Halkier, DJ Kliebenstein Current Opinion in Plant Biology 13 (3), 347-352		2010
A complex interplay of three R2R3 MYB transcription factors determines the profile of aliphatic glucosinolates in Arabidopsis IE Sønderby, M Burow, HC Rowe, DJ Kliebenstein, BA Halkier Plant physiology 153 (1), 348-363		2010
Deficiencies in jasmonate-mediated plant defense reveal quantitative variation in Botrytis cinerea pathogenesis HC Rowe, JW Walley, J Corwin, EKF Chan, K Dehesh, DJ Kliebenstein PLoS pathogens 6 (4), e1000861		2010
All mold is not alike: the importance of intraspecific diversity in necrotrophic plant pathogens HC Rowe, DJ Kliebenstein PLoS pathogens 6 (3), e1000759		2010
Systems biology uncovers the foundation of natural genetic diversity DJ Kliebenstein Plant Physiology 152 (2), 480-486		2010
Flavin monooxygenases and transcription factors involved in glucosinolate biosynthesis DJ Kliebenstein, B Halkier, BG Hansen, IE Soenderby US Patent App. 12/438,332		2010
MODIFIED VACUOLE PHENOTYPE1 is an Arabidopsis myrosinase-associated protein involved in endomembrane protein trafficking AE Agee, M Surpin, EJ Sohn, T Girke, A Rosado, BW Kram, C Carter, ... Plant physiology 152 (1), 120-132		2010
Use of secondary metabolite variation in crop improvement DJ Kliebenstein Plant-Derived Natural Products: Synthesis, Function, and Application, 83-95		2009
Advancing genetic theory and application by metabolic quantitative trait loci analysis DJ Kliebenstein The plant cell 21 (6), 1637-1646		2009
Quantification of variation in expression networks DJ Kliebenstein Plant Systems Biology, 227-245		2009
Anti-rust antitrust DJ Kliebenstein, HC Rowe Science 323 (5919), 1301-1302		2009
Competition, herbivory and genetics interact to determine the accumulation and fitness consequences of a defence metabolite RA Lankau, DJ Kliebenstein Journal of Ecology, 78-88		2009
The genetic basis of constitutive and herbivore-induced ESP-independent nitrile formation in Arabidopsis M Burow, A Losansky, R Muller, A Plock, DJ Kliebenstein, U Wittstock Plant physiology 149 (1), 561-574		2009
A quantitative genetics and ecological model system: understanding the aliphatic glucosinolate biosynthetic network via QTLs DJ Kliebenstein Phytochemistry reviews 8 (1), 243-254		2009
The chromatin remodeler SPLAYED regulates specific stress signaling pathways JW Walley, HC Rowe, Y Xiao, EW Chehab, DJ Kliebenstein, D Wagner, ... PLoS pathogens 4 (12), e1000237		2008
A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis BG Hansen, RE Kerwin, JA Ober, VM Lambrix, T Mitchell-Olds, ... Plant physiology 148 (4), 2096-2108		2008
Complex Genetics Control Natural Variation in Arabidopsis thaliana Resistance to Botrytis cinerea HC Rowe, DJ Kliebenstein Genetics 180 (4), 2237-2250		2008
Determination of the absolute configuration of the glucosinolate methyl sulfoxide group reveals a stereospecific biosynthesis of the side chain F Vergara, M Wenzler, BG Hansen, DJ Kliebenstein, BA Halkier, ... Phytochemistry 69 (15), 2737-2742		2008
Subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis J Li, BG Hansen, JA Ober, DJ Kliebenstein, BA Halkier Plant Physiology 148 (3), 1721-1733		2008
Genetic networks controlling structural outcome of glucosinolate activation across development AM Wentzell, I Boeye, Z Zhang, DJ Kliebenstein PLoS Genetics 4 (10), e1000234		2008
The Generation of Complex Epistasis by Metabolic Networks DJ Kliebenstein NSF Award Number 0820580. Directorate for Biological Sciences 8 (820580), 20580		2008
Differential Levels of Insect Herbivory in the Field Associated with Genotypic Variation in Glucosinolates in Arabidopsis thaliana MG Bidart-Bouzat, DJ Kliebenstein Journal of chemical ecology 34 (8), 1026-1037		2008
Ecological costs of biotrophic versus necrotrophic pathogen resistance, the hypersensitive response and signal transduction DJ Kliebenstein, HC Rowe Plant Science 174 (6), 551-556		2008
Genotype, age, tissue, and environment regulate the structural outcome of glucosinolate activation AM Wentzell, DJ Kliebenstein Plant physiology 147 (1), 415-428		2008
Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome HC Rowe, BG Hansen, BA Halkier, DJ Kliebenstein The Plant Cell 20 (5), 1199-1216		2008
A role for gene duplication and natural variation of gene expression in the evolution of metabolism DJ Kliebenstein PloS one 3 (3), e1838		2008
ESP and ESM1 mediate indol-3-acetonitrile production from indol-3-ylmethyl glucosinolate in Arabidopsis M Burow, ZY Zhang, JA Ober, VM Lambrix, U Wittstock, J Gershenzon, ... Phytochemistry 69 (3), 663-671		2008
Identifying the molecular basis of QTLs: eQTLs add a new dimension BG Hansen, BA Halkier, DJ Kliebenstein Trends in Plant Science 13 (2), 72-77		2008
Subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis. LJ Li Jing, BG Hansen, JA Ober, DJ Kliebenstein, BA Halkier		2008
Research Area: Biochemical Processes and Macromolecular Structures DJ Kliebenstein		2008
A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates IE Sønderby, BG Hansen, N Bjarnholt, C Ticconi, BA Halkier, ... PloS one 2 (12), e1322		2007
Elevated Genetic Variation Within Virulence-Associated Botrytis cinerea Polygalacturonase Loci HC Rowe, DJ Kliebenstein Molecular Plant-Microbe Interactions 20 (9), 1126-1137		2007
Characterization of seed‐specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana DJ Kliebenstein, JC D’Auria, AS Behere, JH Kim, KL Gunderson, ... The Plant Journal 51 (6), 1062-1076		2007
Linking Metabolic QTLs with Network and cis-eQTLs Controlling Biosynthetic Pathways AM Wentzell, HC Rowe, BG Hansen, C Ticconi, BA Halkier, ... Plos genetics 3 (9), e162		2007
Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid H Van Leeuwen, DJ Kliebenstein, MAL West, K Kim, R Van Poecke, ... The Plant Cell 19 (7), 2099-2110		2007
Identification of a flavin‐monooxygenase as the S‐oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis BG Hansen, DJ Kliebenstein, BA Halkier The Plant Journal 50 (5), 902-910		2007
Metabolomics and Plant Quantitative Trait Locus Analysis–The optimum genetical genomics platform? DJ Kliebenstein Concepts in plant metabolomics, 29-44		2007
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis MAL West, K Kim, DJ Kliebenstein, H Van Leeuwen, RW Michelmore, ... Genetics 175 (3), 1441-1450		2007
Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. H Leeuwen, DJ Kliebenstein, MAL West, K Kim, R Poecke, F Katagiri, ...		2007
A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates DJ Kliebenstein PLoS One 2, e1322Srinivasasainagendra		2007
Convergence, constraint and the role of gene expression during adaptive radiation: floral anthocyanins in Aquilegia JB Whittall, C Voelckel, DJ Kliebenstein, SA Hodges Molecular Ecology 15 (14), 4645-4657		2006
SGER: Connecting the Transcriptome and Metabolome with Natural Genetic Variation. DJ Kliebenstein NSF Award Number 0642481. Directorate for Biological Sciences 6 (642481), 42481		2006
Glucosinolate survey of cultivated and feral mashua (Tropaeolum tuberosum Ruíz & Pavón) in the Cuzco Region of Peru OR Ortega, DJ Kliebenstein, C Arbizu, R Ortega, CF Quiros Economic botany 60 (3), 254-264		2006
Dissertation Research: The Genetic Architecture of Glucosinolate Breakdown Specificity DJ Kliebenstein NSF Award Number 0608516. Directorate for Biological Sciences 6 (608516), 8516		2006
Identification of QTLs controlling gene expression networks defined a priori DJ Kliebenstein, MAL West, H van Leeuwen, O Loudet, RW Doerge, ... Bmc Bioinformatics 7 (1), 308		2006
The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory (vol 13, pg 2793, 2001) V Lambrix, M Reichelt, T Mitchell-Olds, DJ Kliebenstein, J Gershenzon Plant Cell 18 (6), 1537-1537		2006
High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis MAL West, H van Leeuwen, A Kozik, DJ Kliebenstein, RW Doerge, ... Genome research 16 (6), 787-795		2006
The Gene Controlling the Quantitative Trait Locus EPITHIOSPECIFIER MODIFIER1 Alters Glucosinolate Hydrolysis and Insect Resistance in Arabidopsis Z Zhang, JA Ober, DJ Kliebenstein The Plant Cell 18 (6), 1524-1536		2006
Genomic Survey of Gene Expression Diversity in Arabidopsis thaliana DJ Kliebenstein, MAL West, H Van Leeuwen, K Kim, RW Doerge, ... Genetics 172 (2), 1179-1189		2006
A UV-B-specific signaling component orchestrates plant UV protection BA Brown, C Cloix, GH Jiang, E Kaiserli, P Herzyk, DJ Kliebenstein, ... Proceedings of the National Academy of Sciences 102 (50), 18225-18230		2005
Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity DJ Kliebenstein, HC Rowe, KJ Denby The Plant Journal 44 (1), 25-36		2005
Geographic and evolutionary diversification of glucosinolates among near relatives of Arabidopsis thaliana (Brassicaceae) AJ Windsor, M Reichelt, A Figuth, A Svatoš, J Kroymann, DJ Kliebenstein, ... Phytochemistry 66 (11), 1321-1333		2005
A constitutive PR‐1::luciferase expression screen identifies Arabidopsis mutants with differential disease resistance to both biotrophic and necrotrophic pathogens SL Murray, N Adams, DJ Kliebenstein, GJ Loake, KJ Denby Molecular plant pathology 6 (1), 31-41		2005
Substrate-dependent isothiocyanate toxicity LE Yakabe, JD MacDonald, DJ Kliebenstein Phytopathology 94 (6)		2004
Secondary metabolites and plant/environment interactions: a view through Arabidopsis thaliana tinged glasses DJ Kliebenstein Plant, Cell & Environment 27 (6), 675-684		2004
Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana KJ Denby, P Kumar, DJ Kliebenstein The Plant Journal 38 (3), 473-486		2004
Genomic Basis of Specificity in Glucosinolate Hydrolysis DJ Kliebenstein NSF Award Number 0323759. Directorate for Biological Sciences 3 (323759), 23759		2003
Chapter five Glucosinolate hydrolysis and its impact on generalist and specialist insect herbivores U Wittstock, DJ Kliebenstein, V Lambrix, M Reichelt, J Gershenzon Recent advances in phytochemistry 37, 101-125		2003
Arabidopsis UVR8 Regulates Ultraviolet-B Signal Transduction and Tolerance and Contains Sequence Similarity to Human Regulator of Chromatin Condensation 1 DJ Kliebenstein, JE Lim, LG Landry, RL Last Plant physiology 130 (1), 234-243		2002
Disarming the mustard oil bomb A Ratzka, H Vogel, DJ Kliebenstein, T Mitchell-Olds, J Kroymann Proceedings of the National Academy of Sciences 99 (17), 11223-11228		2002
Genetic Architecture of Plastic Methyl Jasmonate Responses in Arabidopsis thaliana DJ Kliebenstein, A Figuth, T Mitchell-Olds Genetics 161 (4), 1685-1696		2002
Comparative Analysis of Quantitative Trait Loci Controlling Glucosinolates, Myrosinase and Insect Resistance in Arabidopsis thaliana D Kliebenstein, D Pedersen, B Barker, T Mitchell-Olds Genetics 161 (1), 325-332		2002
Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana M Reichelt, PD Brown, B Schneider, NJ Oldham, E Stauber, J Tokuhisa, ... Phytochemistry 59 (6), 663-671		2002
Comparative analysis of insect resistance QTL and QTL controlling the myrosinase/glucosinolate system in Arabidopsis thaliana DJ Kliebenstein Genetics 161, 325-332		2002
The Arabidopsis Epithiospecifier Protein Promotes the Hydrolysis of Glucosinolates to Nitriles and Influences Trichoplusia ni Herbivory V Lambrix, M Reichelt, T Mitchell-Olds, DJ Kliebenstein, J Gershenzon The Plant Cell 13 (12), 2793-2807		2001
Comparative Quantitative Trait Loci Mapping of Aliphatic, Indolic and Benzylic Glucosinolate Production in Arabidopsis thaliana Leaves and Seeds DJ Kliebenstein, J Gershenzon, T Mitchell-Olds Genetics 159 (1), 359-370		2001
Genetic control of natural variation in Arabidopsis glucosinolate accumulation DJ Kliebenstein, J Kroymann, P Brown, A Figuth, D Pedersen, ... Plant physiology 126 (2), 811-825		2001
Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate–dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis DJ Kliebenstein, VM Lambrix, M Reichelt, J Gershenzon, T Mitchell-Olds The Plant Cell 13 (3), 681-693		2001
LSD1 regulates salicylic acid induction of copper zinc superoxide dismutase in Arabidopsis thaliana DJ Kliebenstein, RA Dietrich, AC Martin, RL Last, JL Dangl Molecular plant-microbe interactions 12 (11), 1022-1026		1999
Arabidopsis superoxide dismutase DJ Kliebenstein Cornell University		1999
Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization DJ Kliebenstein, RA Monde, RL Last Plant physiology 118 (2), 637-650		1998
Destabilization ofrbcS sense transcripts by antisense RNA CZ Jiang, D Kliebenstein, N Ke, S Rodermel Plant molecular biology 25 (3), 569-576		1994
Antisense RNA inhibition of Rubisco activase expression CZ Jiang, WP Quick, R Alred, D Kliebenstein, SR Rodermel The Plant Journal 5 (6), 787-798		1994
MECHANISM OF ANTISENSE INHIBITION IN TOBACCO ANTISENSE MUTANTS DJ KLIEBENSTEIN, CZ JIANG, N KE, SR RODERMEL PLANT PHYSIOLOGY 102 (1), 18-18		1993
ANTISENSE MESSENGER-RNA INHIBITION OF RUBISCO ACTIVASE EXPRESSION CZ JIANG, DJ KLIEBENSTEIN, SR RODERMEL PLANT PHYSIOLOGY 102 (1), 37-37		1993
Partial Disruption of the Arabidopsis 2s Seed Storage Proteins Highlights the Essential Role of Redox Homeostasis in Seed Proteome Plasticity and Rebalancing R Angelovici, C Bagaza, H Ansaf, A Yobi, K Czymmek, TP Mawhinney, ... Available at SSRN 5293771
d9d1bfc0-ca35-4e2e-8b59-6fd70d273af0-koad260. pdf Page 08 ME Mabry, RS Abrahams, IA Al-Shehbaz, WJ Baker, S Barak, MS Barker, ...
Pectin Biosynthesis Is Critical for Cell Wall Integrity and G Bethke, A Thao, G Xiong, B Li, NE Soltis, N Hatsugai, RA Hillmer, ...
4.4 Natural genetic variation in growth and metabolite regulatory roles of Allyl glucosinolate in Arabidopsis thaliana M Francisco, DJ Kliebenstein
Intronic T-DNA Insertion Renders Arabidopsis opr3 a Conditional Jasmonic Acid-Producing Mutant1 [C][W][OA] EW Chehab, S Kim, T Savchenko, D Kliebenstein, K Dehesh, J Braam
Systems Biology S Curry, SY Rhee, M Mutwil, LJ Sweetlove, T Obata, AR Fernie, H Claeys, ...
LARGE-SCALE BIOLOGY ARTICLE O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ...
Plant Sciences DM Beckles, AB Bennett, AM Berry, AJ Bloom, E Blumwald, KJ Bradford, ...
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