Publications

Improved yield and health benefits of watercress grown in an indoor vertical farm
Y Qian, LE Hibbert, S Milner, E Katz, DJ Kliebenstein, G Taylor
Scientia Horticulturae 300, 111068
2022
Integrated omics reveal novel functions and underlying mechanisms of the receptor kinase FERONIA in Arabidopsis thaliana
P Wang, NM Clark, TM Nolan, G Song, PM Bartz, CY Liao, ...
The Plant Cell
2022
A keystone gene underlies the persistence of an experimental food web
MA Barbour, DJ Kliebenstein, J Bascompte
Science 376 (6588), 70-73
2022
The ease and complexity of identifying and using specialized metabolites for crop engineering
AJ Muhich, A Agosto-Ramos, DJ Kliebenstein
Emerging Topics in Life Sciences 6 (2), 153-162
2022
Mutation bias reflects natural selection in Arabidopsis thaliana
J Monroe, T Srikant, P Carbonell-Bejerano, C Becker, M Lensink, ...
Nature 602 (7895), 101-105
2022
Aphid Species and Feeding Location on Canola Influences the Impact of Glucosinolates on a Native Lady Beetle Predator
X Cibils-Stewart, DJ Kliebenstein, B Li, K Giles, BP McCornack, J Nechols
Environmental Entomology 51 (1), 52-62
2022
Differential genetic variation underlying Ammonium and Nitrate responses in Arabidopsis thaliana
E Katz, A Knapp, M Lensink, J Stefani, JJ Li, E Shane, K Tuermer-Lee, ...
bioRxiv
2022
A genome‐scale TF–DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism
M Tang, B Li, X Zhou, T Bolt, JJ Li, N Cruz, A Gaudinier, R Ngo, ...
Molecular systems biology 17 (11), e10625
2021
A reevaluation of the role of the ASIL trihelix transcription factors as repressors of the seed maturation program
KA Ruiz, JM Pelletier, Y Wang, MJ Feng, JS Behr, TQ Ðào, B Li, ...
Plant direct 5 (10), e345
2021
Quantitative interactions: the disease outcome of Botrytis cinerea across the plant kingdom
C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, DJ Kliebenstein
G3 11 (8), jkab175
2021
Appendix A: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe
E Katz, SR Abrahams, C Bagaza, S Holden, CJ Pires, R Angelovici, ...
THE POWER OF SYNTENY: DEEP EVOLUTIONARY INSIGHTS FROM COMPARATIVE GENOMICS, 91
2021
Innovation, conservation, and repurposing of gene function in root cell type development
K Kajala, M Gouran, L Shaar-Moshe, GA Mason, J Rodriguez-Medina, ...
Cell 184 (12), 3333-3348. e19
2021
Genome size evolution is associated with climate seasonality and glucosinolates, but not life history, soil nutrients or range size, across a clade of mustards
NI Cacho, PJ McIntyre, DJ Kliebenstein, SY Strauss
Annals of botany 127 (7), 887-902
2021
Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe
E Katz, JJ Li, B Jaegle, H Ashkenazy, SR Abrahams, C Bagaza, S Holden, ...
Elife 10, e67784
2021
Fine mapping identifies NAD‐ME1 as a candidate underlying a major locus controlling temporal variation in primary and specialized metabolism in Arabidopsis
M Francisco, DJ Kliebenstein, VM Rodríguez, P Soengas, R Abilleira, ...
The Plant Journal 106 (2), 454-467
2021
The Arabidopsis thaliana nucleotide sugar transporter GONST2 is a functional homolog of GONST1
B Jing, T Ishikawa, N Soltis, N Inada, Y Liang, G Murawska, L Fang, ...
Plant direct 5 (3), e00309
2021
Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly
P Zhao, X Zhang, Y Gong, D Wang, D Xu, N Wang, Y Sun, L Gao, SS Liu, ...
PLoS pathogens 17 (1), e1008770
2021
Plant Responses Underlying Timely Specialized Metabolites Induction of Brassica Crops.
M Doghri, VM Rodríguez, DJ Kliebenstein, M Francisco
Frontiers in Plant Science 12, 807710-807710
2021
Modeling quantitative interactions: the disease outcome of generalist fungal pathogen across the plant kingdom
C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, D Kliebenstein
Authorea Preprints
2020
flasher, a novel mutation in a glucosinolate modifying enzyme, conditions changes in plant architecture and hormone homeostasis
AN Garrido, E Supijono, P Boshara, SJ Douglas, PE Stronghill, B Li, ...
The Plant Journal 103 (6), 1989-2006
2020
Plant secondary metabolites as defenses, regulators, and primary metabolites: the blurred functional trichotomy
M Erb, DJ Kliebenstein
Plant physiology 184 (1), 39-52
2020
Diverse allyl glucosinolate catabolites independently influence root growth and development
E Katz, R Bagchi, V Jeschke, ARM Rasmussen, A Hopper, M Burow, ...
Plant Physiology 183 (3), 1376-1390
2020
mGWAS uncovers Gln-Glucosinolate seed-specific interaction and its role in metabolic homeostasis
ML Slaten, A Yobi, C Bagaza, YO Chan, V Shrestha, S Holden, E Katz, ...
Plant physiology 183 (2), 483-500
2020
FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes.
P Fernández-Calvo, S Iñigo, G Glauser, M Tang, B Li, R De Clercq, ...
The New Phytologist 227 (4), 1124-1137
2020
Pathogen Genetic Control of Transcriptome Variation in the Arabidopsis thalianaBotrytis cinerea Pathosystem
NE Soltis, C Caseys, W Zhang, JA Corwin, S Atwell, DJ Kliebenstein
Genetics 215 (1), 253-266
2020
Using networks to identify and interpret natural variation
DJ Kliebenstein
Current opinion in plant biology 54, 122-126
2020
Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense
B Li, M Tang, C Caseys, A Nelson, M Zhou, X Zhou, SM Brady, ...
Genetics 214 (2), 529-541
2020
mGWAS Uncovers Gln-Glucosinolate Seed-Speciic Interaction and its Role in Metabolic Homeostasis
E Katz, C Kanstrup, AE Lipka, DJ Kliebenstein, HH Nour-Eldin, ...
 
2020
Innovation, conservation and repurposing of gene function in plant root cell type development
K Kajala, L Shaar-Moshe, GA Mason, M Gouran, J Rodriguez-Medina, ...
BioRxiv
2020
Genetic diversity increases food-web persistence in the face of climate warming
MA Barbour, DJ Kliebenstein, J Bascompte
bioRxiv
2020
Quantitative interactions drive Botrytis cinerea disease outcome across the plant kingdom
C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, D Kliebenstein
BioRxiv, 507491
2020
Identification and stacking of crucial traits required for the domestication of pennycress
R Chopra, EB Johnson, R Emenecker, EB Cahoon, J Lyons, ...
Nature Food 1 (1), 84-91
2020
PMR 5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens
D Chiniquy, W Underwood, J Corwin, A Ryan, H Szemenyei, CC Lim, ...
The Plant Journal 100 (5), 1022-1035
2019
Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels
M Salehin, B Li, M Tang, E Katz, L Song, JR Ecker, DJ Kliebenstein, ...
Nature Communications 10 (1), 1-9
2019
Plant networks as traits and hypotheses: moving beyond description
A Marshall-Colón, DJ Kliebenstein
Trends in plant science 24 (9), 840-852
2019
Viruses mobilize plant immunity to deter nonvector insect herbivores
P Zhao, X Yao, C Cai, R Li, J Du, Y Sun, M Wang, Z Zou, Q Wang, ...
Science advances 5 (8), eaav9801
2019
Diversity in plant defense genes increases food-web persistence
MA Barbour, DJ Kliebenstein, J Bascompte
2019 ESA Annual Meeting (August 11--16)
2019
Questionomics: Using Big Data to Ask and Answer Big Questions
DJ Kliebenstein
The Plant Cell 31 (7), 1404-1405
2019
Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield
W Zhang, JA Corwin, DH Copeland, J Feusier, R Eshbaugh, DE Cook, ...
elife 8, e44279
2019
The effect of rhizosphere microbes outweighs host plant genetics in reducing insect herbivory
CJ Hubbard, B Li, R McMinn, MT Brock, L Maignien, BE Ewers, ...
Molecular ecology 28 (7), 1801-1811
2019
Interactions of Tomato and Botrytis cinerea Genetic Diversity: Parsing the Contributions of Host Differentiation, Domestication, and Pathogen Variation
NE Soltis, S Atwell, G Shi, R Fordyce, R Gwinner, D Gao, A Shafi, ...
The Plant Cell 31 (2), 502-519
2019
Progress toward the identification and stacking of crucial domestication traits in pennycress
R Chopra, EB Johnson, R Emenecker, EB Cahoon, J Lyons, ...
bioRxiv, 609990
2019
Regulation of root angle and gravitropism
TW Toal, M Ron, D Gibson, K Kajala, B Splitt, LS Johnson, ND Miller, ...
G3: Genes, Genomes, Genetics 8 (12), 3841-3855
2018
Transcriptional regulation of nitrogen-associated metabolism and growth
A Gaudinier, J Rodriguez-Medina, L Zhang, A Olson, C Liseron-Monfils, ...
Nature 563 (7730), 259-264
2018
Digital imaging combined with genome-wide association mapping links loci to plant-pathogen interaction traits
RF Fordyce, NE Soltis, C Caseys, R Gwinner, JA Corwin, S Atwell, ...
Plant Physiology 178 (3), 1406-1422
2018
Plant nutrient acquisition entices herbivore
DJ Kliebenstein
Science 361 (6403), 642-643
2018
Fine mapping and candidate gene analysis for a major locus controlling circadian clock and secondary metabolism in Arabidopsis
M Francisco Candeira, VM Rodríguez Graña, ME Cartea González, ...
 
2018
The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis
R Samira, B Li, D Kliebenstein, C Li, E Davis, JW Gillikin, TA Long
Plant Molecular Biology 97 (4), 297-309
2018
Brassica oleracea: the dog of the plant world
ME Mabry, E Gallagher, MA Gore, JA Labate, SD Turner, IR Baxter, ...
Meeting Abstract 1
2018
Comparison of the relative potential for epigenetic and genetic variation to contribute to trait stability
EST Aller, LM Jagd, DJ Kliebenstein, M Burow
G3: Genes, Genomes, Genetics 8 (5), 1733-1746
2018
Quantitative genetics and genomics of plant resistance to insects
DJ Kliebenstein
Annual Plant Reviews online, 235-262
2018
GONST2 transports GDP-Mannose for sphingolipid glycosylation in the Golgi apparatus of Arabidopsis
B Jing, T Ishikawa, N Soltis, N Inada, Y Liang, G Murawska, ...
BioRxiv, 346775
2018
Combining Digital Imaging and Genome Wide Association Mapping to Dissect Uncharacterized Traits in Plant/Pathogen Interactions
RF Fordyce, NE Soltis, C Caseys, R Gwinner, JA Corwin, S Atwell, ...
bioRxiv, 296939
2018
Crop domestication and pathogen virulence: interactions of tomato and Botrytis genetic diversity
NE Soltis, S Atwell, G Shi, R Fordyce, R Gwinner, D Gao, A Shafi, ...
bioRxiv, 255992
2018
A generalist pathogen view of plant evolution
C Caseys, G Shi, N Soltis, R Gwinner, J Corwin, S Atwell, D Kliebenstein
bioRxiv, 507491
2018
Resequencing and association mapping of the generalist pathogen Botrytis cinerea
S Atwell, JA Corwin, N Soltis, W Zhang, D Copeland, J Feusier, ...
BioRxiv, 489799
2018
Rhizosphere microbes and host plant genotype influence the plant metabolome and reduce insect herbivory
CJ Hubbard, B Li, R McMinn, MT Brock, L Maignien, BE Ewers, ...
bioRxiv, 297556
2018
Network-guided discovery of extensive epistasis between transcription factors involved in aliphatic glucosinolate biosynthesis
B Li, M Tang, A Nelson, H Caligagan, X Zhou, C Clark-Wiest, R Ngo, ...
The Plant Cell 30 (1), 178-195
2018
An evolutionarily young defense metabolite influences the root growth of plants via the ancient TOR signaling pathway
FG Malinovsky, MLF Thomsen, SJ Nintemann, LM Jagd, B Bourgine, ...
Elife 6, e29353
2017
An integrated RNAseq-1H NMR metabolomics approach to understand soybean primary metabolism regulation in response to Rhizoctonia foliar blight disease
TR Copley, KA Aliferis, DJ Kliebenstein, SH Jabaji
BMC plant biology 17 (1), 1-18
2017
Initiation of ER body formation and indole glucosinolate metabolism by the plastidial retrograde signaling metabolite, MEcPP
JZ Wang, B Li, Y Xiao, Y Ni, H Ke, P Yang, A de Souza, M Bjornson, X He, ...
Molecular plant 10 (11), 1400-1416
2017
Plastic Transcriptomes Stabilize Immunity to Pathogen Diversity: The Jasmonic Acid and Salicylic Acid Networks within the Arabidopsis/Botrytis Pathosystem
W Zhang, JA Corwin, D Copeland, J Feusier, R Eshbaugh, F Chen, ...
The Plant Cell 29 (11), 2727-2752
2017
Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field
RE Kerwin, J Feusier, A Muok, C Lin, B Larson, D Copeland, JA Corwin, ...
new phytologist 215 (3), 1249-1263
2017
Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population
RJC Markelz, MF Covington, MT Brock, UK Devisetty, DJ Kliebenstein, ...
G3: Genes, Genomes, Genetics 7 (7), 2259-2270
2017
A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels
SJ Douglas, B Li, DJ Kliebenstein, E Nambara, CD Riggs
Plos One 12 (5), e0177045
2017
A global coexpression network approach for connecting genes to specialized metabolic pathways in plants
JH Wisecaver, AT Borowsky, V Tzin, G Jander, DJ Kliebenstein, A Rokas
The Plant Cell 29 (5), 944-959
2017
Quantitative resistance: more than just perception of a pathogen
JA Corwin, DJ Kliebenstein
The Plant Cell 29 (4), 655-665
2017
Observability of plant metabolic networks Is reflected in the correlation of metabolic profiles
K Schwahn, A Küken, DJ Kliebenstein, AR Fernie, Z Nikoloski
Plant physiology 172 (2), 1324-1333
2016
An integrative genetic study of rice metabolism, growth and stochastic variation reveals potential C/N partitioning loci
B Li, Y Zhang, SA Mohammadi, D Huai, Y Zhou, DJ Kliebenstein
Scientific Reports 6 (1), 1-13
2016
Genome wide association mapping in Arabidopsis thaliana identifies novel genes involved in linking allyl glucosinolate to altered biomass and defense
M Francisco Candeira, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, ...
Frontiers Media
2016
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense
M Francisco, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, RE Kerwin, ...
Frontiers in plant science 7, 1010
2016
False idolatry of the mythical growth versus immunity tradeoff in molecular systems plant pathology
DJ Kliebenstein
Physiological and Molecular Plant Pathology 95, 55-59
2016
The defense metabolite, allyl glucosinolate, modulates Arabidopsis thaliana biomass dependent upon the endogenous glucosinolate pathway
M Francisco Candeira, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, ...
Frontiers Media
2016
The Defense Metabolite, Allyl Glucosinolate, Modulates Arabidopsis thaliana Biomass Dependent upon the Endogenous Glucosinolate Pathway
M Francisco, B Joseph, H Caligagan, B Li, JA Corwin, C Lin, R Kerwin, ...
Frontiers in Plant Science 7, 774
2016
Expansive Phenotypic Landscape of Botrytis cinerea Shows Differential Contribution of Genetic Diversity and Plasticity
JA Corwin, A Subedy, R Eshbaugh, DJ Kliebenstein
Molecular Plant-Microbe Interactions 29 (4), 287-298
2016
Molecular mechanisms governing differential robustness of development and environmental responses in plants
J Lachowiec, C Queitsch, DJ Kliebenstein
Annals of botany 117 (5), 795-809
2016
Isolate Dependency of Brassica rapa Resistance QTLs to Botrytis cinerea
W Zhang, ST Kwon, F Chen, DJ Kliebenstein
Frontiers in plant science 7, 161
2016
The Quantitative Basis of the Arabidopsis Innate Immune System to Endemic Pathogens Depends on Pathogen Genetics
JA Corwin, D Copeland, J Feusier, A Subedy, R Eshbaugh, C Palmer, ...
PLoS genetics 12 (2), e1005789
2016
Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana
G Bethke, A Thao, G Xiong, B Li, NE Soltis, N Hatsugai, RA Hillmer, ...
The Plant Cell 28 (2), 537-556
2016
Nonlinear selection and a blend of convergent, divergent and parallel evolution shapes natural variation in glucosinolates
DJ Kliebenstein, NI Cacho
Advances in Botanical Research 80, 31-55
2016
Metabolism: Evolution retraces its steps to advance
DJ Kliebenstein
Elife 4, e12386
2015
Keeping the rhythm: light/dark cycles during postharvest storage preserve the tissue integrity and nutritional content of leafy plants
JD Liu, D Goodspeed, Z Sheng, B Li, Y Yang, DJ Kliebenstein, J Braam
BMC plant biology 15 (1), 1-9
2015
Natural variation of plant metabolism: genetic mechanisms, interpretive caveats, and evolutionary and mechanistic insights
NE Soltis, DJ Kliebenstein
Plant Physiology 169 (3), 1456-1468
2015
Macroevolutionary patterns of glucosinolate defense and tests of defense‐escalation and resource availability hypotheses
NI Cacho, DJ Kliebenstein, SY Strauss
New Phytologist 208 (3), 915-927
2015
Overexpression of three glucosinolate biosynthesis genes in Brassica napus identifies enhanced resistance to Sclerotinia sclerotiorum and Botrytis cinerea
Y Zhang, D Huai, Q Yang, Y Cheng, M Ma, DJ Kliebenstein, Y Zhou
PLoS One 10 (10), e0140491
2015
The Plant Cell Introduces Breakthrough Reports: A New Forum for Cutting-Edge Plant Research
S Merchant, SY Bednarek, JA Birchler, G Coupland, NA Eckardt, ...
The Plant Cell 27 (10), 2667-2668
2015
Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity
S Atwell, JA Corwin, NE Soltis, A Subedy, KJ Denby, DJ Kliebenstein
Frontiers in microbiology 6, 996
2015
Investigation of the multifunctional gene AOP3 expands the regulatory network fine-tuning glucosinolate production in Arabidopsis
LM Jensen, DJ Kliebenstein, M Burow
Frontiers in plant science 6, 762
2015
Natural variation in cross-talk between glucosinolates and onset of flowering in Arabidopsis
LM Jensen, HSK Jepsen, BA Halkier, DJ Kliebenstein, M Burow
Frontiers in plant science 6, 697
2015
Transcriptional networks governing plant metabolism
A Gaudinier, M Tang, DJ Kliebenstein
Current Plant Biology 3, 56-64
2015
The glucosinolate biosynthetic gene AOP2 mediates feed-back regulation of jasmonic acid signaling in Arabidopsis
M Burow, S Atwell, M Francisco, RE Kerwin, BA Halkier, DJ Kliebenstein
Molecular plant 8 (8), 1201-1212
2015
Quantitative Variation in Responses to Root Spatial Constraint within Arabidopsis thaliana
B Joseph, L Lau, DJ Kliebenstein
The Plant Cell 27 (8), 2227-2243
2015
Reassess the t Test: Interact with All Your Data via ANOVA
SM Brady, M Burow, W Busch, Ö Carlborg, KJ Denby, J Glazebrook, ...
The Plant Cell 27 (8), 2088-2094
2015
Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses
M Nafisi, M Stranne, L Fimognari, S Atwell, HJ Martens, PR Pedas, ...
Frontiers in plant science 6, 550
2015
The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana
Y Zhang, B Li, D Huai, Y Zhou, DJ Kliebenstein
Frontiers in Plant Science 6, 343
2015
In planta variation of volatile biosynthesis: an alternative biosynthetic route to the formation of the pathogen-induced volatile homoterpene DMNT via triterpene degradation in …
R Sohrabi, JH Huh, S Badieyan, LH Rakotondraibe, DJ Kliebenstein, ...
The Plant Cell 27 (3), 874-890
2015
Genetic variation in the nuclear and organellar genomes modulates stochastic variation in the metabolome, growth, and defense
B Joseph, JA Corwin, DJ Kliebenstein
PLoS genetics 11 (1), e1004779
2015
Plant Physiology Preview. Published on August 13, 2015, as DOI: 10.1104/pp. 15.01108
NE Soltis, DJ Kliebenstein
 
2015
FOCUS ON METABOLISM
IMSMI Desalegn, W Etalo, RCH De Vos, MHAJ Joosten, RD Hall, ...
 
2015
Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness
R Kerwin, J Feusier, J Corwin, M Rubin, C Lin, A Muok, B Larson, B Li, ...
Elife 4
2015
An Arabidopsis gene regulatory network for secondary cell wall synthesis
M Taylor-Teeples, L Lin, M De Lucas, G Turco, TW Toal, A Gaudinier, ...
Nature 517 (7536), 571-575
2015
Promoter-based integration in plant defense regulation
B Li, A Gaudinier, M Tang, M Taylor-Teeples, NT Nham, C Ghaffari, ...
Plant physiology 166 (4), 1803-1820
2014
Meta-analysis of metabolome QTLs in Arabidopsis: trying to estimate the network size controlling genetic variation of the metabolome
B Joseph, S Atwell, JA Corwin, B Li, DJ Kliebenstein
Frontiers in plant science 5, 461
2014
Response of turnip to Botrytis cinerea infection and their relationship with glucosinolate profiles
ST Kwon, DJ Kliebenstein
Korean Journal of Plant Resources 27 (4), 371-379
2014
The AT-hook motif-encoding gene METABOLIC NETWORK MODULATOR 1 underlies natural variation in Arabidopsis primary metabolism
B Li, DJ Kliebenstein
Frontiers in plant science 5, 415
2014
Synthetic biology of metabolism: using natural variation to reverse engineer systems
DJ Kliebenstein
Current opinion in plant biology 19, 20-26
2014
Interview with Daniel Kliebenstein.
DJ Kliebenstein
Trends in plant science 19 (4), 204-205
2014
Orchestration of plant defense systems: genes to populations
DJ Kliebenstein
Trends in plant science 19 (4), 250-255
2014
Promoter-Based Integration in Plant Defense Regulation1 [W][OPEN]
B Li, A Gaudinier, M Tang, M Taylor-Teeples, NT Nham, C Ghaffari, ...
 
2014
Natural genetic variation in growth and metabolite regulatory roles of Allyl glucosinolate in Arabidopsis thaliana
M Francisco Candeira, DJ Kliebenstein
Wageningen Universiteit
2014
Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome
B Joseph, JA Corwin, B Li, S Atwell, DJ Kliebenstein
Elife 2, e00776
2013
Fatty acids and early detection of pathogens
JW Walley, DJ Kliebenstein, RM Bostock, K Dehesh
Current opinion in plant biology 16 (4), 520-526
2013
Postharvest circadian entrainment enhances crop pest resistance and phytochemical cycling
D Goodspeed, JD Liu, EW Chehab, Z Sheng, M Francisco, ...
Current Biology 23 (13), 1235-1241
2013
Hierarchical Nuclear and Cytoplasmic Genetic Architectures for Plant Growth and Defense within Arabidopsis
B Joseph, JA Corwin, T Züst, B Li, M Iravani, G Schaepman-Strub, ...
The Plant Cell 25 (6), 1929-1945
2013
Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato
M Ron, MW Dorrity, M de Lucas, T Toal, RI Hernandez, SA Little, ...
Plant Physiology 162 (2), 755-768
2013
Conducting Genome‐Wide Association Mapping of Metabolites
S Atwell, DJ Kliebenstein
The Handbook of Plant Metabolomics, 255-271
2013
New synthesis—regulatory evolution, the veiled world of chemical diversification
DJ Kliebenstein
Journal of chemical ecology 39 (3), 349-349
2013
Making new molecules—evolution of structures for novel metabolites in plants
DJ Kliebenstein
Current opinion in plant biology 16 (1), 112-117
2013
Natural enemies drive geographic variation in plant defenses
T Züst, C Heichinger, U Grossniklaus, R Harrington, DJ Kliebenstein, ...
Science 338 (6103), 116-119
2012
Exploring the shallow end; estimating information content in transcriptomics studies
DJ Kliebenstein
Frontiers in plant science 3, 213
2012
Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis
O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ...
The Plant Cell 24 (9), 3530-3557
2012
Making new molecules–evolution of pathways for novel metabolites in plants
DJ Kliebenstein, A Osbourn
Current opinion in plant biology 15 (4), 415-423
2012
Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes
Y Xiao, T Savchenko, EEK Baidoo, WE Chehab, DM Hayden, V Tolstikov, ...
Cell 149 (7), 1525-1535
2012
Plant defense compounds: systems approaches to metabolic analysis
DJ Kliebenstein
Annual review of phytopathology 50, 155-73
2012
What can causal networks tell us about metabolic pathways?
RH Blair, DJ Kliebenstein, GA Churchill
PLoS computational biology 8 (4), e1002458
2012
Model misinterpretation within biology: phenotypes, statistics, networks, and inference
DJ Kliebenstein
Frontiers in plant science 3, 13
2012
Making new molecules-evolution of structures for novel metabolites in plants
DJ Kliebenstein
Current Opinion in Plant Biology 16, 1-6
2012
An ecological genomic approach challenging the paradigm of differential plant responses to specialist versus generalist insect herbivores
MG Bidart-Bouzat, D Kliebenstein
Oecologia 167 (3), 677-689
2011
Genomic analysis of QTLs and genes altering natural variation in stochastic noise
JM Jimenez-Gomez, JA Corwin, B Joseph, JN Maloof, DJ Kliebenstein
PLoS genetics 7 (9), e1002295
2011
Using knockout mutants to reveal the growth costs of defensive traits
T Züst, B Joseph, KK Shimizu, DJ Kliebenstein, LA Turnbull
Proceedings of the Royal Society B: Biological Sciences 278 (1718), 2598-2603
2011
Biosynthesis and Defensive Function of N  Δ-Acetylornithine, a Jasmonate-Induced Arabidopsis Metabolite
AM Adio, CL Casteel, M De Vos, JH Kim, V Joshi, B Li, C Juéry, J Daron, ...
The Plant Cell 23 (9), 3303-3318
2011
Cofactome analyses reveal enhanced flux of carbon into oil for potential biofuel production
DM Hayden, H Rolletschek, L Borisjuk, J Corwin, DJ Kliebenstein, ...
The Plant Journal 67 (6), 1018-1028
2011
The quantitative genetics of phenotypic error or uniformity
DJ Kliebenstein
Frontiers in Genetics 2, 59
2011
Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana
EKF Chan, HC Rowe, JA Corwin, B Joseph, DJ Kliebenstein
PLoS biology 9 (8), e1001125
2011
Chemically mediated tritrophic interactions: opposing effects of glucosinolates on a specialist herbivore and its predators
R Chaplin‐Kramer, DJ Kliebenstein, A Chiem, E Morrill, NJ Mills, ...
Journal of Applied Ecology 48 (4), 880-887
2011
Genetic and functional modularity: how does an organism solve a nearly infinite genetic/environmental problem space?
DJ Kliebenstein
Heredity 106 (6), 909
2011
Intronic T-DNA Insertion Renders Arabidopsis opr3 a Conditional Jasmonic Acid-Producing Mutant
EW Chehab, S Kim, T Savchenko, D Kliebenstein, K Dehesh, J Braam
Plant Physiology 156 (2), 770-778
2011
Arctic mustard flower color polymorphism controlled by petal-specific downregulation at the threshold of the anthocyanin biosynthetic pathway
CA Dick, J Buenrostro, T Butler, ML Carlson, DJ Kliebenstein, JB Whittall
PloS one 6 (4), e18230
2011
Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages in Arabidopsis
RE Kerwin, JM Jimenez-Gomez, D Fulop, SL Harmer, JN Maloof, ...
The Plant Cell 23 (2), 471-485
2011
Quantitative genomics of natural variation in plant metabolism: the illusion of simplicity
DJ Kliebenstein
第二届植物代谢国际会议论文集
2011
The complex genetic architecture of the metabolome
EKF Chan, HC Rowe, BG Hansen, DJ Kliebenstein
PLoS genetics 6 (11), e1001198
2010
A new method for measuring relative growth rate can uncover the costs of defensive compounds in Arabidopsis thaliana
C Paul‐Victor, T Züst, M Rees, DJ Kliebenstein, LA Turnbull
New Phytologist 187 (4), 1102-1111
2010
Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-wide Association Mapping
EKF Chan, HC Rowe, DJ Kliebenstein
Genetics 185 (3), 991-1007
2010
Using network biology to identify quantitative genetic variation altering signaling in both plant host and generalist pathogens
DJ Kliebenstein
PHYTOPATHOLOGY 100 (6), S165-S165
2010
Regulatory networks of glucosinolates shape Arabidopsis thaliana fitness
M Burow, BA Halkier, DJ Kliebenstein
Current opinion in plant biology 13 (3), 347-352
2010
A complex interplay of three R2R3 MYB transcription factors determines the profile of aliphatic glucosinolates in Arabidopsis
IE Sønderby, M Burow, HC Rowe, DJ Kliebenstein, BA Halkier
Plant physiology 153 (1), 348-363
2010
Deficiencies in jasmonate-mediated plant defense reveal quantitative variation in Botrytis cinerea pathogenesis
HC Rowe, JW Walley, J Corwin, EKF Chan, K Dehesh, DJ Kliebenstein
PLoS pathogens 6 (4), e1000861
2010
All mold is not alike: the importance of intraspecific diversity in necrotrophic plant pathogens
HC Rowe, DJ Kliebenstein
PLoS pathogens 6 (3), e1000759
2010
Systems biology uncovers the foundation of natural genetic diversity
DJ Kliebenstein
Plant Physiology 152 (2), 480-486
2010
Flavin monooxygenases and transcription factors involved in glucosinolate biosynthesis
DJ Kliebenstein, B Halkier, BG Hansen, IE Soenderby
US Patent App. 12/438,332
2010
MODIFIED VACUOLE PHENOTYPE1 is an Arabidopsis myrosinase-associated protein involved in endomembrane protein trafficking
AE Agee, M Surpin, EJ Sohn, T Girke, A Rosado, BW Kram, C Carter, ...
Plant physiology 152 (1), 120-132
2010
Advancing genetic theory and application by metabolic quantitative trait loci analysis
DJ Kliebenstein
The plant cell 21 (6), 1637-1646
2009
Anti-rust antitrust
DJ Kliebenstein, HC Rowe
Science 323 (5919), 1301-1302
2009
Use of secondary metabolite variation in crop improvement
DJ Kliebenstein
Plant-derived natural products, 83-95
2009
Quantification of variation in expression networks
DJ Kliebenstein
Plant Systems Biology, 227-245
2009
Competition, herbivory and genetics interact to determine the accumulation and fitness consequences of a defence metabolite
RA Lankau, DJ Kliebenstein
Journal of Ecology, 78-88
2009
The genetic basis of constitutive and herbivore-induced ESP-independent nitrile formation in Arabidopsis
M Burow, A Losansky, R Muller, A Plock, DJ Kliebenstein, U Wittstock
Plant physiology 149 (1), 561-574
2009
A quantitative genetics and ecological model system: understanding the aliphatic glucosinolate biosynthetic network via QTLs
DJ Kliebenstein
Phytochemistry reviews 8 (1), 243-254
2009
The chromatin remodeler SPLAYED regulates specific stress signaling pathways
JW Walley, HC Rowe, Y Xiao, EW Chehab, DJ Kliebenstein, D Wagner, ...
PLoS pathogens 4 (12), e1000237
2008
A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis
BG Hansen, RE Kerwin, JA Ober, VM Lambrix, T Mitchell-Olds, ...
Plant physiology 148 (4), 2096-2108
2008
Complex Genetics Control Natural Variation in Arabidopsis thaliana Resistance to Botrytis cinerea
HC Rowe, DJ Kliebenstein
Genetics 180 (4), 2237-2250
2008
Determination of the absolute configuration of the glucosinolate methyl sulfoxide group reveals a stereospecific biosynthesis of the side chain
F Vergara, M Wenzler, BG Hansen, DJ Kliebenstein, BA Halkier, ...
Phytochemistry 69 (15), 2737-2742
2008
Subclade of flavin-monooxygenases involved in aliphatic glucosinolate biosynthesis
J Li, BG Hansen, JA Ober, DJ Kliebenstein, BA Halkier
Plant Physiology 148 (3), 1721-1733
2008
Genetic networks controlling structural outcome of glucosinolate activation across development
AM Wentzell, I Boeye, Z Zhang, DJ Kliebenstein
PLoS genetics 4 (10), e1000234
2008
Differential levels of insect herbivory in the field associated with genotypic variation in glucosinolates in Arabidopsis thaliana
MG Bidart-Bouzat, DJ Kliebenstein
Journal of chemical ecology 34 (8), 1026-1037
2008
Ecological costs of biotrophic versus necrotrophic pathogen resistance, the hypersensitive response and signal transduction
DJ Kliebenstein, HC Rowe
Plant Science 174 (6), 551-556
2008
Genotype, age, tissue, and environment regulate the structural outcome of glucosinolate activation
AM Wentzell, DJ Kliebenstein
Plant physiology 147 (1), 415-428
2008
Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome
HC Rowe, BG Hansen, BA Halkier, DJ Kliebenstein
The Plant Cell 20 (5), 1199-1216
2008
A role for gene duplication and natural variation of gene expression in the evolution of metabolism
DJ Kliebenstein
PloS one 3 (3), e1838
2008
ESP and ESM1 mediate indol-3-acetonitrile production from indol-3-ylmethyl glucosinolate in Arabidopsis
M Burow, ZY Zhang, JA Ober, VM Lambrix, U Wittstock, J Gershenzon, ...
Phytochemistry 69 (3), 663-671
2008
Identifying the molecular basis of QTLs: eQTLs add a new dimension
BG Hansen, BA Halkier, DJ Kliebenstein
Trends in plant science 13 (2), 72-77
2008
Research Area: Biochemical Processes and Macromolecular Structures
DJ Kliebenstein
 
2008
The Chromatin Remodeler SPLAYED Regulates Specific Stress Signaling
JW Walley, HC Rowe, Y Xiao, EW Chehab, DJ Kliebenstein
 
2008
A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates
IE Sønderby, BG Hansen, N Bjarnholt, C Ticconi, BA Halkier, ...
PLoS One 2 (12), e1322
2007
Elevated Genetic Variation Within Virulence-Associated Botrytis cinerea Polygalacturonase Loci
HC Rowe, DJ Kliebenstein
Molecular Plant-Microbe Interactions 20 (9), 1126-1137
2007
Characterization of seed‐specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana
DJ Kliebenstein, JC D’Auria, AS Behere, JH Kim, KL Gunderson, ...
The Plant Journal 51 (6), 1062-1076
2007
Linking Metabolic QTLs with Network and cis-eQTLs Controlling Biosynthetic Pathways
AM Wentzell, HC Rowe, BG Hansen, C Ticconi, BA Halkier, ...
Plos genetics 3 (9), e162
2007
Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid
H Van Leeuwen, DJ Kliebenstein, MAL West, K Kim, R Van Poecke, ...
The Plant Cell 19 (7), 2099-2110
2007
Identification of a flavin‐monooxygenase as the S‐oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis
BG Hansen, DJ Kliebenstein, BA Halkier
The Plant Journal 50 (5), 902-910
2007
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
MAL West, K Kim, DJ Kliebenstein, H Van Leeuwen, RW Michelmore, ...
Genetics 175 (3), 1441-1450
2007
Metabolomics and Plant Quantitative Trait Locus Analysis–The optimum genetical genomics platform?
DJ Kliebenstein
Concepts in plant metabolomics, 29-44
2007
Convergence, constraint and the role of gene expression during adaptive radiation: floral anthocyanins in Aquilegia
JB Whittall, C Voelckel, DJ Kliebenstein, SA Hodges
Molecular Ecology 15 (14), 4645-4657
2006
Identification of QTLs controlling gene expression networks defined a priori
DJ Kliebenstein, MAL West, H van Leeuwen, O Loudet, RW Doerge, ...
BMC bioinformatics 7 (1), 1-17
2006
Glucosinolate survey of cultivated and feral mashua (Tropaeolum tuberosum Ruíz & Pavón) in the Cuzco Region of Peru
OR Ortega, DJ Kliebenstein, C Arbizu, R Ortega, CF Quiros
Economic botany 60 (3), 254-264
2006
The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia ni herbivory (vol 13, pg 2793, 2001)
V Lambrix, M Reichelt, T Mitchell-Olds, DJ Kliebenstein, J Gershenzon
Plant Cell 18 (6), 1537-1537
2006
High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis
MAL West, H Van Leeuwen, A Kozik, DJ Kliebenstein, RW Doerge, ...
Genome Research 16 (6), 787-795
2006
The Gene Controlling the Quantitative Trait Locus EPITHIOSPECIFIER MODIFIER1 Alters Glucosinolate Hydrolysis and Insect Resistance in Arabidopsis
Z Zhang, JA Ober, DJ Kliebenstein
The Plant Cell 18 (6), 1524-1536
2006
Genomic Survey of Gene Expression Diversity in Arabidopsis thaliana
DJ Kliebenstein, MAL West, H Van Leeuwen, K Kim, RW Doerge, ...
Genetics 172 (2), 1179-1189
2006
A UV-B-specific signaling component orchestrates plant UV protection
BA Brown, C Cloix, GH Jiang, E Kaiserli, P Herzyk, DJ Kliebenstein, ...
Proceedings of the National Academy of Sciences 102 (50), 18225-18230
2005
Secondary metabolites influence Arabidopsis/Botrytis interactions: variation in host production and pathogen sensitivity
DJ Kliebenstein, HC Rowe, KJ Denby
The Plant Journal 44 (1), 25-36
2005
Geographic and evolutionary diversification of glucosinolates among near relatives of Arabidopsis thaliana (Brassicaceae)
AJ Windsor, M Reichelt, A Figuth, A Svatoš, J Kroymann, DJ Kliebenstein, ...
Phytochemistry 66 (11), 1321-1333
2005
A constitutive PR‐1::luciferase expression screen identifies Arabidopsis mutants with differential disease resistance to both biotrophic and necrotrophic pathogens
SL Murray, N Adams, DJ Kliebenstein, GJ Loake, KJ Denby
Molecular plant pathology 6 (1), 31-41
2005
Substrate-dependent isothiocyanate toxicity
LE Yakabe, JD MacDonald, DJ Kliebenstein
Phytopathology 94 (6)
2004
Secondary metabolites and plant/environment interactions: a view through Arabidopsis thaliana tinged glasses
DJ Kliebenstein
Plant, Cell & Environment 27 (6), 675-684
2004
Identification of Botrytis cinerea susceptibility loci in Arabidopsis thaliana
KJ Denby, P Kumar, DJ Kliebenstein
The Plant Journal 38 (3), 473-486
2004
" Present address: Department of Vegetable Crops, University of California
U Wittstock, DJ Kliebenstein, V Lambrix, M Reichelt
Integrative Phytochemistry: from Ethnobotany to Molecular Ecology: Recent …
2003
Chapter five Glucosinolate hydrolysis and its impact on generalist and specialist insect herbivores
U Wittstock, DJ Kliebenstein, V Lambrix, M Reichelt, J Gershenzon
Recent advances in phytochemistry 37, 101-125
2003
Arabidopsis UVR8 Regulates Ultraviolet-B Signal Transduction and Tolerance and Contains Sequence Similarity to Human Regulator of Chromatin Condensation 1
DJ Kliebenstein, JE Lim, LG Landry, RL Last
Plant physiology 130 (1), 234-243
2002
Disarming the mustard oil bomb
A Ratzka, H Vogel, DJ Kliebenstein, T Mitchell-Olds, J Kroymann
Proceedings of the National Academy of Sciences 99 (17), 11223-11228
2002
Genetic Architecture of Plastic Methyl Jasmonate Responses in Arabidopsis thaliana
DJ Kliebenstein, A Figuth, T Mitchell-Olds
Genetics 161 (4), 1685-1696
2002
Comparative Analysis of Quantitative Trait Loci Controlling Glucosinolates, Myrosinase and Insect Resistance in Arabidopsis thaliana
D Kliebenstein, D Pedersen, B Barker, T Mitchell-Olds
Genetics 161 (1), 325-332
2002
Benzoic acid glucosinolate esters and other glucosinolates from Arabidopsis thaliana
M Reichelt, PD Brown, B Schneider, NJ Oldham, E Stauber, J Tokuhisa, ...
Phytochemistry 59 (6), 663-671
2002
Comparative analysis of insect resistance QTL and QTL controlling the myrosinase/glucosinolate system in Arabidopsis thaliana
DJ Kliebenstein
Genetics 161, 325-332
2002
The Arabidopsis Epithiospecifier Protein Promotes the Hydrolysis of Glucosinolates to Nitriles and Influences Trichoplusia ni Herbivory
V Lambrix, M Reichelt, T Mitchell-Olds, DJ Kliebenstein, J Gershenzon
The Plant Cell 13 (12), 2793-2807
2001
Comparative Quantitative Trait Loci Mapping of Aliphatic, Indolic and Benzylic Glucosinolate Production in Arabidopsis thaliana Leaves and Seeds
DJ Kliebenstein, J Gershenzon, T Mitchell-Olds
Genetics 159 (1), 359-370
2001
Genetic control of natural variation in Arabidopsis glucosinolate accumulation
DJ Kliebenstein, J Kroymann, P Brown, A Figuth, D Pedersen, ...
Plant physiology 126 (2), 811-825
2001
Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate–dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis
DJ Kliebenstein, VM Lambrix, M Reichelt, J Gershenzon, T Mitchell-Olds
The Plant Cell 13 (3), 681-693
2001
LSD1 regulates salicylic acid induction of copper zinc superoxide dismutase in Arabidopsis thaliana
DJ Kliebenstein, RA Dietrich, AC Martin, RL Last, JL Dangl
Molecular plant-microbe interactions 12 (11), 1022-1026
1999
Arabidopsis superoxide dismutase
DJ Kliebenstein
Cornell University
1999
Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization
DJ Kliebenstein, RA Monde, RL Last
Plant physiology 118 (2), 637-650
1998
Arabidopsis mutants altered in antioxidant enzyme accumulation.
DJ Kliebenstein, PL Conklin, LG Landry, EH Williams, RL Last
PLANT PHYSIOLOGY 114 (3), 193-193
1997
Destabilization ofrbcS sense transcripts by antisense RNA
CZ Jiang, D Kliebenstein, N Ke, S Rodermel
Plant molecular biology 25 (3), 569-576
1994
Antisense RNA inhibition of Rubisco activase expression
CZ Jiang, WP Quick, R Alred, D Kliebenstein, SR Rodermel
The Plant Journal 5 (6), 787-798
1994
MECHANISM OF ANTISENSE INHIBITION IN TOBACCO ANTISENSE MUTANTS
DJ KLIEBENSTEIN, CZ JIANG, N KE, SR RODERMEL
PLANT PHYSIOLOGY 102 (1), 18-18
1993
ANTISENSE MESSENGER-RNA INHIBITION OF RUBISCO ACTIVASE EXPRESSION
CZ JIANG, DJ KLIEBENSTEIN, SR RODERMEL
PLANT PHYSIOLOGY 102 (1), 37-37
1993